RNA id: TU334971


Basic Information

Item Value
RNA id TU334971
length 7647
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G282649
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 14715045 ~ 14731004 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attaggaaaaatgatttaatatcgGAGACAGAAGCAAAAAACTGCATCACACAAGAACgtacatttacaaaaataagtCTGACTGTTTCAGCTACACAGTTAGGTTAACAGCGAAggacagagaaaccagaaaaatcTAAACAGCTAAAAGCAAAAGTCCTCAAATTACTTGTTTTATCTCTTTGTCAAACTAATACATTTATCCACTGAAGGGGACTAAATACTTCTAAATCGTCTAAATCGTCTTATCATGGAGACTGCACAATATACTGAACAAAATGAAACTTACCGCCTTCGTAAAGACTCTTTGAAAAAGACAAACTTGTTTTTTAAGTACTTGTAAGCCAAAAGGAAAACTCCCGACCCTCtttccaaaaacaaaagaaaacaaagagatAAAGATAAAGGAAACCAAACGCTGAAgtgaagaagaacaagaagatgTCAAAGGTCAAAGATACCAAGCCAAAGTTCTAGAAAATCTTTATATTAAAACTTAACCATCCTGGATGCCAACTTAGAAATCAAAACTCGGGAACAGCCGCTGGCCGACCCCTGTGCCGGGTCAGACAGACTCTCagtaggtttttttgttttttgttttttttttctttaattgccAGTATAAAAAGTTGCACTGGTACAAAAGGCATAAGTACAATCAGTTTTAGAAATAGGAaagcctgcattttttttgtactttttaaattcCATCCAATGACAGATTCCAAGGAGTCAAACAAACATGTACCACGCTTACATAATCCACTGAAATGCATTGACTTTGGCTTTTCTCAAGACAATACTTAAAACTATTCAAATCCTTTTAGAATCAAACAAAATGATATTAATCTACAGacaacaagcttttttttttatacggCACATCAGatcaacacacatacagtattatttttttgtccaaaaaacTTGACATAATAAGCGAAAAATGCAAAGAAACTCCACTTTTCTTGTAAAATACACTGTTGTTAAATAGCACTTAAGAGAaagcaaaaacagaaagaacaaaCAGATTTAAGAGAAGATGTGTGTGGTGAAGAAAACCCCTGAGTATAGAGCCTCAGCAAGCACATCTGCAAAGACCCTTACGAGTTTGTGCTTTACTAAAcatctaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagaaatgGAGTGTGTCGGGGATTGTGTGCGTAGCGAGATCGCAAAATCTTACCCTGTTTGATTCGATAGTGGCAAAGCAGACTAAGTTGATAcacatatgcatgcacacacacatacacatacacacacacacacacacacacacacacacacacacacacacatacgcacaaaTAACCTTGGCAGCACTCAGGCAGCAGCCTATTCCACCCCACTAATACTGAGCGTCATGTTAAGGCAACGGCAGGATTTGGGTAGAAAATAGTGCTTTAGTGAAGTAAACAGGGGTTTTTAGGGGGGGCCGGCTGTAAACCACGTCTGTAAACAAGATTGTATACGGGCCATTTACAACACGTGTAAACGTTTTCGACAAAAGTGCAATGGGAAATATGGTACTGTGGACGGGTGAGTTCTCCTTTGGCATCAGGGTGCTTTAAGACCTGAAGAAGCAGAGAGAGGCAGCACGAGGCAAACAGGCATGTGCCGATAACTCCTAACACGCTACTGCTAGAGTGGACGTATAACATTATCGCCACTAGCCCTGTGTCTAATTTGGGAGGTGGGTAGGCATTTCTGGGCAGTGTTTGTGCTTCTGAGATAAAGTCCATCCTCTTTAGAAGGCAGCATATGCACAGGTGTCTTTTAAGCTTCAGTACATCTGTCCCTCTTAAAGCAGTTAAAGCAGAAAGTTTGAACTGACTGTAAACTGTGAAGCCCTACTGATACAaaagaaatgtcttttttttcttccaacaATGATGCACGATGAGATATTAAACTGTGAACGCCTGCTGAACATTGAGAATGACAGTGCTATACTGTGATGGCACCATGTAAAGTGAAAAGCTCATCAACCAATAAACTGTGTCGTTTATGTGCCAGACAGCGTACACGATGCCAAACGCTCAGGGGTTGAGCTGCTCTCGATAATTCATCTGTTGTTTTCTCCGGGATGCTGCTAACCCCTGCATTAGCGTGAATTCGATCTGCGAAACCAATTACCGCACCATTCTTATATGAGTATGTGTCTCTGCCCATGTTCAACAAACCaagtgctgtttatttatttcattttttaaattaatttaggtGAATACATTTAGGTGATGTAAGCTTCTTctcagataataaaaaaaaaaaggaaggtgCGATCTCTGTGAACAGAAATCTGCAAACGTTTTGCACTTTTGTGACATTTCATCACATGATTTGGTGTAAAAATGCATCCAGAATCAGATGCTGGTTAAAATGCAGCCCCATGACACCATGTAAACATGttctctatttaaaaaaaaaaaaaaagcaatatggTGACAAACAAATAATTGTAGCATGATATGAAACTTTACTATCGACACATGCCTGGCAATGAGCAACACGCCTCTTTACAGCTCATCTCTGATTTCGATTGGCTACTCAGGTTAGCGATACGATGCCAATtcatgtgtgtaggtgtgtgtgctgctgagaCTCGTGCTCAGGGggctcacatacacacaccatcgaAGAAAAGAGGGCTGTGAGGTCAACCTttagcacaggtgtgtgtatgcgtgcatgtgggtgtgtgtgtatggttgtgcacgtgcatgtgtgtgagagtgtgtgagagaaaagagagagagagagatagagagacagagagagagaacaagagagagaatgacacaTGGGCACTTTTTACATCTttacaaaaatgaaagcaaaaacgTGAACAGTTCAGGCAACAAGACCACAGAGTAGCAAGTTAACAACCgcttttttaaatctatatccTTAAATATGAGGGATACAAAACACTTACGTAATAAAATACCCATGTTATCAAATCATTTCACAAGTAATACACTGAAGCTGTAGGCAGGATGTACCGTCAGAATTTTGGCACTAAAGTCCactcatcttgttttttttttttttttttttgtgtttcctttgtaagaaaaaaaaaattacaatttcgCTGAACGCAACAACACATCTAAATATTGTTTCCCACAATcgaaattcaaaataataagaataatgacATTGATGCTTCACAAGCTGACATTGTAAAAGGTTTATATAGCTAATTACCCGACAAGAAATTTCAAATAGGGACtcttaaaaaaggaaagaaaaaaaacaaacaaacaaacaaaaaaaaacaaaacaggtaTACTCTAGTAGCAATAGTACTATGATAGGATTTTTGTCTATGTTCAAGTAAACCGATTTTTAGTCTTCTCTTTAAAAACACAAGACGAATAAGACTATTAGACTTGTGATGAAACCACGACTCAATCCACAAAAAGCACCGACGGGAACGCGGGTCACacaaactgttgtttttttttcctctatacatttaaacagtataaaatataGGTCATTTCATGTGCATTTATACCACGGATTGTCTAACGGTAGATCAGTTCAGCAAAAAGGTGTGACATGTAGGTAGCATTTCCCCCAAACAGGGcactcttttttcttgtttttttttttttttaatacctttaCTACTCTAGAAAAAAGTGGTTTTATATAGACTTTAATGAGAAACCGAGCCACTTCAAATGGCCTTATCAAAAAACTTTACACTgcctgaaaaatgtaaaaaccacAAGCTCGCTCTGAGAGACTCTTAAGTTCAAttagacagttttttttattaaaactgctTGGAAGTAGTCTAGTTCTCGTAGAAACCAGCTCGGTCTACCTGCACGTCTCATACTGCGAAACGCGCTGACAGGAAGTCCCGAAGCCAATCCCTGTATTGTACTTTCAAGTTtactttaaatgaatgaaagaaacaaaaatgaaatgtaaagcaAATCATAAGCAAAATCTTAAGCTAGCAAACGATGCAaattcttttaatttctttgccacaggtttgttttttatttattacatttgtgaaatgttaaaaacagcGCTTCTTAAAATGACGACGCTTCGGGTTATACTATTAAATAGACTCTACCTATTTGCGAGTGTGAACGCAGCTTTAGCGCTTTAGCTTTTTcacatttgttattatttttttccttccttctttccccCATCCCTCCCCCAACTGTtataataaaaagagaaagaacacaaacaaaaaaaggtcaaaaacagaaaaacagttaAAAGCTCCAAATGAGgtcacatgcaaaaaaaaaaaaaatacccaacAAAGATCAAGCTAAGATCAAAGTCGAGGAGAGATCAGTAGGAGGAGACCAGATTATGATCAGGAGAACTCAGAAAGACATCGGAGACAATGACGAGAcgatgagacttttttttttttttgaacgcCACGTAGACATGCTAGGCAAACGATGAGCAAAGAGTCATGGAGATGAGTTTCTAGGGAAGAAAACGGGAGAGGAGAgttacacacacagcctctggCACACAACTACAGCATTAAAAAACCATGAGAACAACAAACAACagataacaacaacagcaacaacatcaacaacgacaacaacagcGCTACTAGCCAGCGGTAACCCAGTGcaagaagatttttttattttcagttatctctctcttttttttaatatactacACATATCTCACACAGATAAACATATGTAAATGATatgtacattcacacacacacacacacacacacacacacaaacatacacacatacacacatacatacagcacCCCAAAGAATCCATCGGTCCCTTGTTTAAGAGACACAGCTTGATGGATCTTGAGCTGAAAAACGaatacacgtttttttttttgtaatgcggaaacaaaaaacagaacacCAGACGAAGCTAAAATggaacagaaggaaaaaagggagaaacagATTGCACATGTAAAGTGCTACTACTCACGGCGAGGGAGGGAGTGAAGGAGGGattgagagagaggaggaaaaggacAAGGAGCAAAGAAGTAGGGCTTCacaattaatcaaataaattgCAATTTCAGCCTCTGTAATTAAACATGAAAAGGTCACTTTTTACCTGTGTGGTAATTCAAGTTCCAGTCTAGTCGTCTACAACAGTGAGGACTaagtggttaaggttctgtCCTATTGACCGGAATGTTGTGAGTTTTAATCCCAGTGTCACTCCTGAGCTCTTAAACAAGACCCTGAACCCTCACCTGCTGAGCTCCATGCCTGGATTGGATTCTGCTTCAAAGGAATagttccatatatatatatatttatatatacaatttaaGGCTTCTTGTTATTGTAGCTAACATGTAATGGAACTCGATCTCACCGAAAGTCTGATGTTCAGTAATATCACACAAATGGCAACTAAAAGTCAATCgaattaacaaacaaataaatggaaatgttaTGATCTGCAGAggtgctaacaagaaaatcctagcaggtagagaaaaaaaaacagtattttacaaCAACAAATGCTAGCATATGTCGGAGGACAAGATCCATGCTaacagcataaatgataaacagcATATATGATGAACAGCCCACTCCACGCCCACTCCACGCCCACTCCACCACCCCCACCCACTCTCTGTTTTCCTATTGGTTCACACAAACCTAGgtttgtgaattcacaggtcgAAGTTCACCTAGATAGAAGTGGCACTAAGAGGAACAAACCGCTTCCAGGAGCAATAGCACATCTTTCATTTCCAGCGTCATTTTGCGTTTGTGCTGGGTTGTACTTTATACGCATTTGTTCTGAAGTTTCCAGGTTTCTTCCGTATCGCCCTAGAAATGAGTTAGATATcgtaaatgctacagctaaaccatAGATGCTGGCACGTCTGTGGTATCACGATGCTTTCACTGTACTGTGcaaacttctaaaaaaaaaaacgcagtagtaagtgtgtaagtgacaCACTACTAGTCAGTTGACGCTTTTATCTAAAGTCATTTACATGTTAGAATCCAAtccacacacagagctgagcagTTTAGGGTGAAGCTGTTTGCTCGAATTTGGCTCTCTGGCTTTCCTGGGATTTTATCCAACTGCCTTCCTTCCACCAGAGCAGAGGCTTAACGGCTGAGCTGCCACTTATTTCATTCTCAATTAATAACTCTAACAGACAGTATCGCTGAAAATGATCAGGACAATCGTGCAGCCCCATTAGACTGAAATATAACTGGGACATGATAGAATGAAGAAAGACAGATGGGAGGGAAAGAGATAGggacagaaagatggagagatagaaGGATGGgaatgagggagggagagagggggggTGATCCTCTGTTCTCTTCCCACATCAGATTGTGTGGCTTCAGAAGACCGGACGGCGAAAAGCACGTCTTCACAAACCCGATCACTTAACCAGAATAAATAAAGTCTTTCACTTCAGTAGAGGCAGTAGAAATtttttgtgtataaaaatagaactgcttttttacaaataaaatttacaggCCTGTggctttctgtactctgatatatatttttttatttcaataaacaTCAAGTATTTGCAGTTGAACCCGCCACCCCGCCGGAAacataaaatgctttattattagattcttttttatttgtcatctCTTTTTAAAATGCTCTACATAAAATGCTCTGTTGGACAAACAccataacaaacaaaaaaaacccaacgcAAAAGGCGTAATGCTTtaatggcaggtgtgtgtgtatatgtgtgtttgtgtgtgtgtatgtgtgtgtgtggagagtctCTTTTGGCAGTCGTTGCCGTTAACTACAGCGAGGCCACATCGGGTTTTGACCCTTTTCTCTCTGGTGCCGTTGGGCCGAGGGGTCGAAGGAGCAGCGGAGCCCGGAGCCAACACCAGAGGTCAAAGGGCAAAGTCGAACGTGCATATTGGTGCTTTTTCTGGGGCTTTGGCCCCGTCCCTACGCATTGACACAAGCCTCAAGGTTCACAACGGGAAACTAAATGTAGTTTAGAGAACTTTCCTTTCGGCTGTTGTTGTCGTTATcatcataaaaagaaaaaaaaaaggcatggtATAAATAtctacttaaaaaataaataaatagttttatacacaactcaaaataaaaagggaaaaaaaaaactagcaatAGCTATTCATTCATCGCAGGTCATACAAAATAATAGCAAAAATGGAAGCGTTCATGTGAATAGaaaccaaataataataataataataataataataataataataataataataataataatactgccatcaaaaaattttaaaaagaatgttCGGGGGAAAGTGACTCCCTCTAGTGGTGTTAAGGGTGAAACTCTCCCCCATGTCCCCCCCTTTTCCCATCCCCGGGGCGGTTGCCGTGGCAGCAGTGGGGACTTACCCTAGCAGTGTAGGGACAGAGAGGAGTGGCCCTAGCAATTAGATCAGTAGGGCTTGCTGTCATTCTTAGAGCGCTTCAGCTGCACCTTCAGGCGCTTCATTCCGATCTGAAACCCGTTCATCGCCTGAATGGCTGCTTGTGCCGACACGGGATTGTCATAACTGACGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334700 lncRNA downstream 331252 14389823 ~ 14390557 (-) True G282410
TU334699 lncRNA downstream 348296 14372731 ~ 14373513 (-) True G282409
TU334694 lncRNA downstream 388677 14332932 ~ 14333132 (-) True G282404
TU334657 lncRNA downstream 751912 13953999 ~ 13969897 (-) False G282368
TU334999 lncRNA upstream 8212 14739216 ~ 14739437 (-) True G282673
TU335044 lncRNA upstream 81918 14812922 ~ 15105995 (-) True G282718
XR_003403333.2 lncRNA upstream 478344 15209348 ~ 15213255 (-) False LOC113532334
XR_003403332.2 lncRNA upstream 478344 15209348 ~ 15213255 (-) True LOC113532334
TU335298 lncRNA upstream 539990 15270994 ~ 15271200 (-) True G282950
XM_026923243.2 mRNA downstream 863136 13851543 ~ 13858673 (-) True kin
XM_026922586.2 mRNA downstream 892301 13808409 ~ 13829508 (-) True LOC113531720
XM_026923772.2 mRNA downstream 934375 13782762 ~ 13787434 (-) True LOC113532385
XM_034313141.1 mRNA downstream 958019 13751523 ~ 13763790 (-) True LOC117599536
XM_034313246.1 mRNA downstream 997180 13665323 ~ 13724629 (-) False sfmbt2
XM_034313070.1 mRNA upstream 142846 14873850 ~ 14885572 (-) False LOC113531970
XM_026922975.2 mRNA upstream 142847 14873851 ~ 14885572 (-) True LOC113531970
XM_026922976.2 mRNA upstream 301644 15032648 ~ 15047471 (-) True slc6a1l
XM_034313261.1 mRNA upstream 328508 15059512 ~ 15078787 (-) False LOC113531968
XM_034313260.1 mRNA upstream 328508 15059512 ~ 15078785 (-) True LOC113531968
XR_003403346.2 other downstream 2140746 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 3061482 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 3133785 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 3462417 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 3714666 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 443344 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 2227520 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 2372561 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 3247781 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 3247781 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00057734 True 8210 lncRNA 0.36 2 NC_007115.7 23880394 ~ 23888794 (+)
grasscarp (Ctenopharyngodon idella) TU124397 False 3617 lncRNA 0.37 2 CI01000019 2587385 ~ 2600907 (-)
eurasian perch (Perca fluviatilis) TU306556 False 7064 lncRNA 0.40 2 NC_053134.1 5544846 ~ 5552199 (+)
bowfin (Amia calva) AMCG00012909 True 4118 mRNA 0.39 5 CM030125.1 13773790 ~ 13785856 (+)