RNA id: TU335292


Basic Information

Item Value
RNA id TU335292
length 726
RNA type TUCP
GC content 0.46
exon number 7
gene id LOC113531972
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15139925 ~ 15184075 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGTTTGTCACTACCTTTGATGGTAAACAATATTCTCTGCCTGGAAAATGTACCTATGTGGCTGCAAGGGGACTCAACTGGACTGTGACCATCACGTCTTCTGTTATGCGAATAGATGAACTGTACCTTGATGTGTTTCAGGAACGATACAACTTCTCGTTAAACAGTGTGAAACTAGGGAAAAATGATATCACTGTCACAGATCTGTCACAGACCGaGCATGTCACAGTCTTCTGGCAGTCTTCGATGTTTGTTAAGATCCAGACATCTTTTGGAATGAAGATGCAAGTCCAAGTTTCTCCCGAAGTTCAAATGTACTTGTATTTGCCACAAAGTGTTACGACCACAGGTCTTTGTGGATCATATAACCACAACACCGAAGATGATTTCACTACAAGCAGTGGTATTGTGGAAAACTCAGCTCAGCCTTTTGCTCTATCGTGGACAATGGGGGACTGCACCCCAAATAACCCCCATGTATGCATCAACACTGACAATGAGAGATTTGCTAAAGATAAGTGCAGCCGGCTGACAAACACAAGTGGTGTGTTTGCCCAGTGCCATGACTATGTGCCTGTTAACACTTACTTTGATGCCTGCATTCAGAGAACCTGCCAGGCTACTTCTGGCTTagaggagcgtgtgtgtgttggcctGGGAAACTATGCTAAAGCCTGCGCCAGTCAGGGCATCGAGATTGGCGACTGGAGAACAGAAACAGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335044 lncRNA downstream 68353 14812922 ~ 15105995 (-) True G282718
TU334999 lncRNA downstream 434911 14739216 ~ 14739437 (-) True G282673
TU334974 lncRNA downstream 443344 14715045 ~ 14731004 (-) False G282649
TU334971 lncRNA downstream 443344 14721809 ~ 14731004 (-) True G282649
TU334700 lncRNA downstream 783791 14389823 ~ 14390557 (-) True G282410
XR_003403333.2 lncRNA upstream 31735 15209348 ~ 15213255 (-) False LOC113532334
XR_003403332.2 lncRNA upstream 31735 15209348 ~ 15213255 (-) True LOC113532334
TU335298 lncRNA upstream 93381 15270994 ~ 15271200 (-) True G282950
TU335356 lncRNA upstream 173093 15350706 ~ 15353441 (-) True G282999
TU335389 lncRNA upstream 210335 15387948 ~ 15390101 (-) True G283022
XM_026923156.2 mRNA downstream 35871 15122734 ~ 15138477 (-) False LOC113532053
XM_026923158.2 mRNA downstream 39024 15122734 ~ 15135324 (-) True LOC113532053
XM_026923159.2 mRNA downstream 41353 15122734 ~ 15132995 (-) False LOC113532053
XM_026923155.2 mRNA downstream 41353 15122734 ~ 15132995 (-) False LOC113532053
XM_026922587.2 mRNA downstream 55787 15116227 ~ 15118561 (-) True LOC113531721
XM_026923534.2 mRNA upstream 36323 15213936 ~ 15236310 (-) True LOC113532243
XM_034313258.1 mRNA upstream 58929 15236542 ~ 15263393 (-) False LOC113532267
XM_026923565.2 mRNA upstream 58929 15236542 ~ 15263393 (-) True LOC113532267
XM_034313283.1 mRNA upstream 147760 15325373 ~ 15336933 (-) False LOC113532250
XM_034313284.1 mRNA upstream 147760 15325373 ~ 15333836 (-) False LOC113532250
XR_003403346.2 other downstream 2593285 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 3514021 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 3586324 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 3914956 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 4167205 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU336422 other upstream 1780911 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 1925952 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 2801172 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 2801172 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 2893134 18070747 ~ 18082361 (-) False tmem209