RNA id: TU335389


Basic Information

Item Value
RNA id TU335389
length 2114
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G283022
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15387948 ~ 15390101 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGGGTTTGGACTCTGCACACAACTTCATCAAGTCTGAGGCCAAAGAGCTGGAACAGACAAATCAAATCTCCACTGAGACATTTACCATGGAATGACATAAGGCACAGTGAGCAGATTGACTGGAAGGTGAATGCTAGTGTTGGTCATCAGTCACGACTCATTATAGCGTGCAGATGACAGAGATGAATGTTGCAGTGAAGAAGCAGATGAACAATGGCTATTATGGTTGAATGGTAGTGTGTTTGAAACCAATATATCATTTACTGCATTTGTTTATAATTAGTCCATGATTCATTGTGTTGGTTTGTATTTATGGTGAGTTACCTCCCCTCAGTAGCTGGACTCCGGTCAGATTCATCACTGCTGCTTTCCTCACCATTCTCTGAATGAGCACAGAATATACAGGCCATGACATAGTTAGCCcaaacacatatatatgtatgcactCATTGGCCCATATAGCATTAACTGGTGCATTTTGAAAATATCCAATTAAAATCTAATAGCCAAGTCTCACTAGCTACCAACCCAGGGAGTATGAAAGCAAACATGTGTGGCGGTCTGGGGAAACCTGTCGGATGTCGCTATGGCTGAATTCTGACAAACAGCCACAACTGATGGCAATTGGGTTTTAACCAAAACTAAGTTTTCCTGCCAGTAATATACTTTGAgctttctattttaaaaaaacctaaatatattttaccaaaatatgCTCTGCAAATATTATCTGCAAAGATCATAATAGGCAAGAAGCCAGCTTAACAAAtgctgatgtggatgatgctgataatcattCTAGATAATCAACTAACTCATTGCTGACCATTTCTCATTGCTGACCAACTTCTGTTGAGATATGTGCAAATAAGTCAGCAATTTCAGTTAAGGAAAACATGTAGTTTTTGGAACTCTACACAGTAGAAAATATCAACATTTGAccatatgaagggttttcctAGGCAGCCACACATGCGTACCCAGTGACAAACCCTGCatgttttcaaactgctgccCATGGATCTCTTAAGGAAGCTGAAGTCAATTGAAGAACAGCACTAACTAAATGAACAGGAGGTACATTCTTTCGGACAACTGTCCATGGATAGCTGTGGCAAATTTAAAACTCAAATTCACAATGAATCTTAGTTGCACCAGTCAGGATTCCAGCTGGTGCATTTATGACGTTTATTATTTTGGAGTAAACATATGGAAAGTTTGAGCAAAACCACCTTCAACCCCTGCATACATTAAGAGAATAGTTGAGTTGATAACAGATGTACGCAATTTTACACTTACCTcaagccaagacatgtttggagCTACTTTCCTTACCTGTTATTTTTCCCCAGCTTTACCCCagtttaaaactaaaaacagcAAACACTGGTCACATATCTTGACTGATCAACACCATTTGGTGTAAGGTAAAAGTGTGTCTATATTTTCTCAAACTAATTCCCCCACTTACAGTATGTACAGGTTGAGGGGATGGCATTTGCAGAATTTATTACTTTAATGAGGTTAGCTGCTCTGAGGTGATTGTTAGCTGAATGTTAAGtttgaaagaaagcaaatgaCGTGCAAAGGACATCTAAGTGCTGCATTTATAGACATAAAACGAAGCCATTGGTAAAGACTATGATAGTAAATCTGAATTCAAAATCACTTCGGGGTAAGAGTGTCAGCTCAGAACATAAGGGCTCAACACAACATAAGGGTGTAGATACACGTAGTCAAGTCAAGAGAAGCCAGTAACCATAAAGTTGTTAGTAAGTCACTAAAACATCTACTACACTATATCCTGTAGTGTGTCTCTGAGGGCAAGCATTCTAACTACTGAAAAGAGCTCAGTTGCAAAGACAAGGCAGAAACTATAGTACTCGAACACCCACTAAATCCCAACTGTTACCATCCTAATAAAGAGGAGAAACTCAGAGGCCCTTTAGGGCATTTAGCTGGTTTAAATGTAGGCCCGTTTAAAAGTAGGAATATGAGGTTTTTGGGAAAGTTAGACCCCATGCACATTTACTACTGTTACAGCTTCTGGTTAGATTGACGAAGATGCATGTACTCACATACAGTTTTGGGAACTTACTTACCAGATGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335356 lncRNA downstream 34507 15350706 ~ 15353441 (-) True G282999
TU335298 lncRNA downstream 116748 15270994 ~ 15271200 (-) True G282950
XR_003403333.2 lncRNA downstream 174693 15209348 ~ 15213255 (-) False LOC113532334
XR_003403332.2 lncRNA downstream 174693 15209348 ~ 15213255 (-) True LOC113532334
TU335044 lncRNA downstream 281953 14812922 ~ 15105995 (-) True G282718
TU335461 lncRNA upstream 127123 15517224 ~ 15521690 (-) True G283081
TU335610 lncRNA upstream 364216 15754317 ~ 15754605 (-) True G283218
TU335704 lncRNA upstream 652261 16042362 ~ 16042579 (-) True G283307
XR_004579867.1 lncRNA upstream 688667 16078768 ~ 16082121 (-) True LOC117599449
TU335902 lncRNA upstream 849414 16239515 ~ 16239901 (-) True G283503
XM_034313283.1 mRNA downstream 51015 15325373 ~ 15336933 (-) False LOC113532250
XM_034313284.1 mRNA downstream 54112 15325373 ~ 15333836 (-) False LOC113532250
XM_026923541.2 mRNA downstream 54137 15325373 ~ 15333811 (-) True LOC113532250
XM_034313258.1 mRNA downstream 124555 15236542 ~ 15263393 (-) False LOC113532267
XM_026923565.2 mRNA downstream 124555 15236542 ~ 15263393 (-) True LOC113532267
XM_026923726.2 mRNA upstream 148956 15539057 ~ 15544883 (-) True alg10
XM_026923836.2 mRNA upstream 164172 15554273 ~ 15563716 (-) False srr
XM_034313341.1 mRNA upstream 164172 15554273 ~ 15561686 (-) True srr
XM_034313186.1 mRNA upstream 366205 15756306 ~ 15778944 (-) False cerk
XM_026923051.2 mRNA upstream 366205 15756306 ~ 15778942 (-) True cerk
TU335292 other downstream 210335 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 2806885 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 3727621 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 3799924 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 4128556 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 1568423 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 1713464 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 2588684 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 2588684 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 2680646 18070747 ~ 18082361 (-) False tmem209

Expression Profile