RNA id: TU335937


Basic Information

Item Value
RNA id TU335937
length 921
lncRNA type sense_over
GC content 0.40
exon number 2
gene id alg12
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16400921 ~ 16406863 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGCTTCTTGGAGCTGAATAGTAAGTGGAGgtatGACAAGAGAGAAGATCTGATGCCTATAGACCCACTCATGAAGACGTACTCGCATGTACTGATGGAGGCAAACGCAACACTGATATCACTACTGAGTGGTTCTCACAAACCCCTCATCTACATCCAGGGTTATGAACGCTTGCTTGTCAGTGCTTCCCAGTTTCCTCCactcagtgttaaattaaccAGTAAGCTTGTGCTTCTTGAGAGTTTGACACACTCTGAGCTTAGCTGATGCAGACGTGTCAACCTTCATTTCCTACCATTTTGTGTAGGAGATCAGAGTATGCTGGTATGACTTAGTAGTCAAAACTAAGAACAGTTCTTTTTCTGCCCCAATAAAAATGGCAACAGAGCTAATCAACATATCAATCTGGAATGGCTGACagttgtgtaggtgtttgaACTCTCTGATCTTAACTGACACCTTCTGAAAGCTCCACCCCCTTCCTCCAATCTCACAGTAGTAATGTTTTTTCTGGTGCTCTTAACTTGATTTTCCCGCTTGAAAGATTCAGCACCCTTGTGTGCGGTTaagctaaaagaaaatgttttgattctgttaatgtgaaataaaatccgTCGAATGTTGTTCAACTTAGATAAGTAGACAGTTAAGAGCAGTTTATTACTATATTTAAGGATGCACTGAAATTTCAGCCAGAAATGTGTCAAAAATTGTATTTCAGGTttttgaaacaggaaaaatatcaGCCATGTGGAAACATTTCACGGTTTCTACAAGGGACGTGGTGCGAGTGATTTGGAAAATGACTACACTGAAAATTactgttctttctttattattttttttactgtttactgcatttttattctCCCCCCCTCCATGAGACTACATTATTCCTCTTCAGTGTTGGAAGCTATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403336.2 lncRNA downstream 104731 16294880 ~ 16296190 (-) True LOC113532372
TU335902 lncRNA downstream 161020 16239515 ~ 16239901 (-) True G283503
XR_004579867.1 lncRNA downstream 318800 16078768 ~ 16082121 (-) True LOC117599449
TU335704 lncRNA downstream 358342 16042362 ~ 16042579 (-) True G283307
TU335610 lncRNA downstream 646316 15754317 ~ 15754605 (-) True G283218
TU335947 lncRNA upstream 46491 16448439 ~ 16448775 (-) False G283546
TU335948 lncRNA upstream 46491 16448439 ~ 16449766 (-) True G283546
TU335946 lncRNA upstream 47069 16449017 ~ 16449766 (-) False G283546
XR_004579992.1 lncRNA upstream 216764 16618712 ~ 16619718 (-) True LOC117599589
TU336181 lncRNA upstream 436587 16838535 ~ 16849762 (-) False LOC113532230
XM_034313343.1 mRNA downstream 11440 16369669 ~ 16389481 (-) True brd1a
XM_034313186.1 mRNA downstream 621977 15756306 ~ 15778944 (-) False cerk
XM_026923051.2 mRNA downstream 621979 15756306 ~ 15778942 (-) True cerk
XM_026923836.2 mRNA downstream 837205 15554273 ~ 15563716 (-) False srr
XM_034313341.1 mRNA downstream 839235 15554273 ~ 15561686 (-) True srr
XM_026922599.2 mRNA upstream 47838 16449786 ~ 16452939 (-) True LOC113531729
XM_026922749.2 mRNA upstream 166747 16568695 ~ 16581436 (-) True il17rel
XM_026922863.2 mRNA upstream 220155 16622103 ~ 16647682 (-) False LOC113531895
XM_026922862.2 mRNA upstream 220155 16622103 ~ 16647682 (-) False LOC113531895
XM_026922861.2 mRNA upstream 220155 16622103 ~ 16647682 (-) True LOC113531895
TU335292 other downstream 1223308 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 3819858 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 4740594 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 4812897 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 5141529 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 556576 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 701617 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 1576837 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 1576837 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 1668799 18070747 ~ 18082361 (-) False tmem209

Expression Profile