RNA id: TU335948


Basic Information

Item Value
RNA id TU335948
length 1328
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G283546
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16448439 ~ 16449766 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttattacagtttgcTCTTCCTTttctatctttttattttattattattattttttttacaattaataaaatttgtttCCTGATGGAAAACATTTGCTGTTTGGGCGGACTTACCagcactaattattattattattattattattattattattattattattattgttacaagGCTGGTTTATGCATCTGGCAAGCCTCCTACACAGATGTGGCTGCTCTCATAGAGCTTGgacaactttttatttaaatgttttaatttttgatttGGAGTGCCTTTTTGAAAGCTGCTGTTTTGGGGCTTTCATTGttgcttttgttgttttgtttgaaaGTTTCCCTTGAGCTGGTTCGGAGGTTACGTTGTGTTTGGTGATCGACCATTGCACATAAACCTCCATCCAGGTCAGGGGTCTTACAGTGGGGAGGGGTTGAACGATAGAAATACTTGAaacgcacacactcactgcgTCTCCTTCTAACGCTGCTCAGTCACATTTTAGCCTATATAGGTTgtctagaaaaaaaactgttcttttttttctttctctgaatgTGTATAGAGATTTGGTATAACCGCTGTACCTTCTGAGGGTCTGGAACGCTCCCTCCCCTCAGCTTACTCTTCTGCTCCTCATCCCACTGCTGAATCTACATTAGTCTCTCTCCTGGGTTTTGGGGGACCTGGGTGTGAAAATGCACAATCAATGCAATATTCATGaatcccttttttttcctcttcttcttcttctcttcttcttttttttttttttttaaagatacactTGTACagtgttgtgctttttttttttttttttttttttgtacagtttttcttctttgcatttaatttatttgtaacatGTAGACATTCCACACTCTGtggctatttattttttatttattgtcatgcTTAAATCCCAAAATTTGCATATCTTTATATGGCCTTTTGTTTGCATtcctgttgtcttttttttttttttttttacatttggacAAGAGATGGTGGATGCACTGAAGCTGTTGTCAAtgtaaaaaggaataaaaacaagGTTTACTTAAATTGAAAGAGCGATGAATGTTATTTAACTTCTCTTGGGTGATTGTTGTCATTTGAAATCAAAAGTccattaatgttgttttttgggTCTGTGTAATCTCCCTATAACAGATGGAAGTGTTTTGCAGAATTGCGATGGGATGGGAGTATACTTATCACTGGCTGCACTGCCATGTGTTAAATATTCTCTCTATAGTAAAATGTATGACACCCAATGGAAATCCTATTTTTATACAAGAACATTTCAATTAAACTTTCATTTGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335937 lncRNA downstream 46491 16400921 ~ 16401948 (-) False alg12
XR_003403336.2 lncRNA downstream 152249 16294880 ~ 16296190 (-) True LOC113532372
TU335902 lncRNA downstream 208538 16239515 ~ 16239901 (-) True G283503
XR_004579867.1 lncRNA downstream 366318 16078768 ~ 16082121 (-) True LOC117599449
TU335704 lncRNA downstream 405860 16042362 ~ 16042579 (-) True G283307
XR_004579992.1 lncRNA upstream 168946 16618712 ~ 16619718 (-) True LOC117599589
TU336181 lncRNA upstream 388769 16838535 ~ 16849762 (-) False LOC113532230
TU336452 lncRNA upstream 591861 17041627 ~ 17043280 (-) True G284003
TU336615 lncRNA upstream 1057110 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 1063844 17513610 ~ 17515240 (-) True G284134
XM_034313344.1 mRNA downstream 41576 16401207 ~ 16406863 (-) True alg12
XM_034313343.1 mRNA downstream 58958 16369669 ~ 16389481 (-) True brd1a
XM_034313186.1 mRNA downstream 669495 15756306 ~ 15778944 (-) False cerk
XM_026923051.2 mRNA downstream 669497 15756306 ~ 15778942 (-) True cerk
XM_034313341.1 mRNA downstream 886753 15554273 ~ 15561686 (-) True srr
XM_026922599.2 mRNA upstream 20 16449786 ~ 16452939 (-) True LOC113531729
XM_026922749.2 mRNA upstream 118929 16568695 ~ 16581436 (-) True il17rel
XM_026922863.2 mRNA upstream 172337 16622103 ~ 16647682 (-) False LOC113531895
XM_026922862.2 mRNA upstream 172337 16622103 ~ 16647682 (-) False LOC113531895
XM_026922861.2 mRNA upstream 172337 16622103 ~ 16647682 (-) True LOC113531895
TU335292 other downstream 1270826 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 3867376 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 4788112 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 4860415 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 5189047 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 508758 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 653799 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 1529019 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 1529019 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 1620981 18070747 ~ 18082361 (-) False tmem209

Expression Profile