RNA id: TU336181


Basic Information

Item Value
RNA id TU336181
length 2218
lncRNA type sense_over
GC content 0.37
exon number 2
gene id LOC113532230
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16838535 ~ 16853395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccCAAATGGGGGGGAAAAAGGATAGAAACAAATGTTATGTGCACTACAGCTGATTTGGagacattttcacttcatattttcactcaaaaatgaacaaacgGAGGACAACATCAGTGACTGTGACTGGCACTTGCGTCTGTCGCGAGCAGCAGAAACCTGGAATCTTATTGGCTGGTTTAGGAGTTTCagcgaccaatcactgatcggcAAAAAGGAGATTTATGGAACCTCTTTGATCTGCTGAACTTCTTTTCTGCAGAAGCTGTGGAGCAAATTCCTGCAAAAGgagcagaaagataaaaacaaaaagagcaaGCAAAGTCAGTGGAGTCAGAACAGCCTCGCCAATGTATGGAATTGAAGATCGACGAGACCAGGCAGTAGCTTCACATGTCAacaattcattaaataaaaggAGTGTGAGTATGGTCACGTTCAATGAACCATAGAGAACCATAAACAATTTTCTTGAGAGCACCTCTAAGAATCCATGATAAAGGAATACTTTTCACCCATGGAGTCTAAGTGAAATTCAAGACGAAGAAAAACTGACACAGTCTAAAGACAGCAAGTGGCttacacactgaactgaactgatttAGTGGAGAATTTACTTGAATAACAGATCATATTCATATATGCTTTATGAGACACTGTGTTCCTGATGTATTTTAGGCTATAAGAACagaagtgtgtgagtatgagtgtgtttgtatgttctcACAGGTACACATCAAGAATATGGCACATACGAACGTTGCATATCATCTGCTATACCAAAACATAGAATTGCATGCTTGGAAACAGCATGCAATCAGACAGAATAATCAAAATGGCTTCAAATCTATTCATTAAAGAATATGGGAGCAATGGCAGCATTAATCAAAAATAGTTCTGTTTTTTGACAGCTGAGGGTAACATTGttaaatctatattttttaatctttcctgtttttttatgGAAACCAAATTGGTTAGATTGATtggtgaactttttttttttaacgtgtgCTGATTTTGTGGAatgattttcttctttctcgTGAATGATTTTGCTTTCAAAGTGTGGATGAACGTTAGAATATTCACATCATGTGAACAGCCTCAGTCCCCCTTTTCAACAATGTTGGCACAGGGCAAAAGCTGCAAGCTTTTGATTTCACATTATTCCTTTTTATAATGACATGGTCATATTGTTTGAAATAACCTTCAGATCAGAATGCTGTATCACCTGTCATGTAAAGCATCTACCTCAATGTCATGATCTTCATTTCTGCCAAAAGCTTTGCCCTGGGAAAGCAGCATCAGTCATGTGACTGGGCCATCATTAAAGCAATGTGTTGTTTACTCTGCCATGCAGTCAGAAGCAGTTATATATCATGTTCAAAATAGCATGACTCACTTGTCCTCATTGTCCATTCTAGACGGGTGTTGTGTCTATGCATTGCTGGCTGTTGTGTCTATACATGCTGTTGTACATTGAAATGCCACCTGGTATCATGTTTGGTACAGTTATGCAAAGTCTTTAATACAATATCTGACCTTGATCGACAGGTAATTAGCAGTGTAAGAGTGTAGTTCATATCAATCTGTACATTTCACAGCATCcaagtgttaaataattttttgggTGTTGTGTTTGTCAAGCTGCATAAATATTGCACTGTATGGTATATAATCTGTTTCCATTTCCAAGTCTACTTTATCCATATAAAAGAGAAATCTGCAATTATAATATGCAACATCAAATACGCAACCTTAATCTATGGAAGAACGGATACAGTATTCAAAATGCACATCTCTACTCACGTGTTCTGCAGTAAGCACAGTTCCTTAAGCCAACTTGTTGGTAAAGTGTGTCAGTAGCCTTCCCGTatgatagagagaaagagagattacatatttttttttgtccatgaaTTATCTTAAGCTCCATAAACATCATGACATGGCAGACAAGAACCAATGGGAGTGTATGAAAGAAAGCAATAGTAGAGAAATTCCATGCATTTCAGTCATTATACACATTGAGGTCTTCCTAGAAGAAACAAAATGCCTTTGCTTTGTTTCCTTTGAATAGgtcctttttaattttttcctgcCATTCTATTTAATCTGACCTATTGTGGTAAATAAGTGTTTGTATCTTGTTTTTCTGATGATTGCATATGGACAGTGTAGAGGGTGATTGTTGGCTTActgatgaatggatggatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579992.1 lncRNA downstream 218817 16618712 ~ 16619718 (-) True LOC117599589
TU335948 lncRNA downstream 388769 16448439 ~ 16449766 (-) True G283546
TU335946 lncRNA downstream 388769 16449017 ~ 16449766 (-) False G283546
TU335947 lncRNA downstream 389760 16448439 ~ 16448775 (-) False G283546
TU335937 lncRNA downstream 436587 16400921 ~ 16401948 (-) False alg12
TU336452 lncRNA upstream 191865 17041627 ~ 17043280 (-) True G284003
TU336615 lncRNA upstream 657114 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 663848 17513610 ~ 17515240 (-) True G284134
TU336619 lncRNA upstream 671664 17521426 ~ 17523643 (-) True G284135
TU336633 lncRNA upstream 698570 17548332 ~ 17553258 (-) True G284146
XM_034313042.1 mRNA downstream 21115 16815760 ~ 16817420 (-) True kcna1b
XM_026923299.2 mRNA downstream 66840 16769270 ~ 16771695 (-) True LOC113532119
XM_034313133.1 mRNA downstream 139079 16688373 ~ 16699456 (-) True LOC113531734
XM_026922603.2 mRNA downstream 139682 16688373 ~ 16698853 (-) False LOC113531734
XM_026923800.2 mRNA downstream 153133 16663927 ~ 16685402 (-) False kdm5a
XM_026922958.2 mRNA upstream 108750 16958512 ~ 17027865 (-) False phf21b
XM_026922955.2 mRNA upstream 108750 16958512 ~ 17027865 (-) False phf21b
XM_026922957.2 mRNA upstream 108750 16958512 ~ 17026876 (-) False phf21b
XM_026923216.2 mRNA upstream 213006 17062768 ~ 17099329 (-) True kiaa0930
XM_026923621.2 mRNA upstream 269584 17119346 ~ 17193239 (-) True LOC113532299
TU335292 other downstream 1660922 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 4257472 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 5178208 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 5250511 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 5579143 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 108762 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 253803 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 1129023 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 1129023 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 1220985 18070747 ~ 18082361 (-) False tmem209

Expression Profile