RNA id: XM_026922957.2


Basic Information

Item Value
RNA id XM_026922957.2
length 4442
RNA type mRNA
GC content 0.44
exon number 14
gene id phf21b
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16958512 ~ 17027865 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgacgcgGCTAACGGCTTTGTTCCTCTCTGACACACTGTAActtcacacactttttatttttgcttcctccatctttgtttccttttctcCGGTTTAGAAACTAGTTGCACAGATGAAGCGAGAGCTGCAGGACGGAGAGCTTAAGAAACAGCTAGAGGAAAGGCAGAGCAGAGTTACAGCCCTAAGCGAAAAACAAAAGCTAGCTGTAAGAAGTTGTCCTGTGGGGACGCCGGCCAAGCCGCTCTCCCTCATCAAGCCTCCCAGCCAGAGCATCGCCATCTCCGTGGTGCCAGCCAAGGCATCTGTTTCCATGGTGACCGCACACATTAACGGACAAAAGGCGGCGAACTCTGACGCGCTGCAGACATCCCCCATCAACCTGCAAACGGCCAACCGAGCGCACAGACCGGGGGATCTGTGCCACTCACAGATGCTGGGAACACTCACAGCAGTGCCCATCAAGGTGCCTCAGGTCAGCTCTCTGCATCGGCTGGCAGGGCAGTCGCCCACTGTGCTACCTCAgGTTAGGCCAAAGACTCTGATCCCGGACAGCCTTCCCCACAGCCCGTGCCAGGAACAGCAGTCCAGCCAGCCACTGAGCCTGGCACGCGGAACTGCTGTGGTCAGCCCCAAAAGCCAGGGACTTGGTACCTTCAGCCCAGAGAGGATGTCCAGCGGCCAGGGCGAGATCACGCCACCTCCCCTGCCCGTGCCCAGTGTCTCCACAGCCACAGCCAGCCCTGGCGTTGCGTACGCCATCATTTCCGCCACCTCACCTGCAGCCAACGGAGTGGCAGCCATGAGCGAGACAGTGAAAGTGCAACCGCTGATCTTCAGCCCAGACAGCAAGGTGATTATAATCCAGCCACAGATCCCTAGCAGCTCTCAGGGTTCTCCAGGCCCCCAGGCTGAGATCCCCTCTCAGGAGCCCAGTCCTGCCCCCTCCCCGCCACACAAGCCCCATAAAAAGGAGGAAGACCCAGAGAAAATTGCGTTCATGGTAGCGCTTGGCCTCGTCACTACAGAACACTTGGAAGAAATCCAGACCAAACGacaggagaggaagagaagaagtaCGGCTAACCCTGCATACAGCCTGTTTGATCCAGAGCGCAAAAGGCTTGCATCAAATTACCTGAACAACCCCCTCTTCCTATCAGCCAGAGACTCTGAGGATCTGTGTTGGAAGgaggagctggagcatGATGACCACTGTGCTGTGTGCAAAGAGGAAGGGAACCTTCAGCAGTGCCACAGCTGCACCCGCGCTTACCACCTAGACTGCTTACACCCTCCGCTCAAGTCCCCACCCAAGGGCATGTGGATGTGCCCTAAGTGCCAGAAGAAGGTTCTGAATAAAGAAAACTTGTCTTGGCCACACAATTTTGTTCAGTCTTACGTTACACACAAAACAGtgagagaggaggagaagagaagacTGATGAGGAGAAACAGTGAACTGAACAAAGAGTGTGCACACCTGAAAGAAGAAGACCAGAGACTCAGCAAATCACTCTTGAAATGCAGAGACGTGAAGGAACGTCTGCTGAGTCAGCAGAGGGAAACTCAGGCGTCTCTGGAACGTCTCCGAGCCCTAATCCGCCTCATCCAGCGTGATCACATGATCCAGGTCACCATGACGGCCACCACCACCACTTCAGGGGGAGCAGCACTGCTCTCTCTGCCCTGGATCAAACCAAGCTCCACCAGCAGCACGAGCAGCTCCACAGCACCCCCTGCAGGGCCCTCCACACTGCTGCACAAGAGTGTGCTGCACTCCCAGGGCAACAACTGAACCCATCACAGGCAAAAACACTTTATTCATAACAACATACGTGCATTTCTTTTCCCACACAAGCTCTTCCCGAGCTTAATGAGAGATACTCACAATGGAAGCTGGAGAGTGAAATCTGGCCAATgtgggttttttcccccaagagcTGTATTGtcttaaggaaaaaaatatcaaaaaatgtaaagaaaaaaaatcaatactaaCTACAGTATATTCTTAAGTCAATTCATAAGTATTTTTTAAACCCAACACCTACAGTGcttaagagatttttttttttaacttattgtttttaatttactaaatgTTCTTGGCCTTAATGTATTTATGACAAATGAGCAGATAACCATGCCGTCATGAATACAGAAATTAAGTATTTTATGCGGctaaagcctttttttaaattacagttttcttttttaaagggGGGATACTTGTTCTACATATAGCGAGAGAGAACATTAGAGTAGCGGTAGTTAAACGAGACATATGAGACAGAGAGGACTGTACAGTGATCTATCCGAGTAGGAAAAGAAATTGTTCTCATTCTCCTAAGAACAACAATCGCCATAATAATTCAGGTGAAAAGGAgatgggaaagtggttttcattGTGTATGTACTTACGAGCATACGAGCCTTCAAACgaacacaaaaaaggaaaaaaaaaaaaaaaaaagagaataacttttttttcagtattaataGAGTTGAGATAAAGGAACAAAGTATTTAAGATGACTACAAAATTTAGCATTTCTAGTGGAGAATTTAGTATTTTCATGCGGATGCCTGTTCATAATTGTGAATTGAAGTATTGGAGAGAGGGGATTGTTGTACATATGTTGTATTGTTATAACAGGTCCTTCTGATTTTTCTTCTGTATTGTTACTCCAATCAGAGCCTCATCAATgatgtttctttctgtttcctttgcacTGACAGCAAAAGTGGACATTAGGAAGGGCCATTCAAGTTCCAATGAGTGTGTGCACCTATTGTCAAACccgttcttttctttctccagtATATAagatatgccaaaaaaaaacccttacatTTTTAAGCTGGGAGCTTTCCCATCTTTCACCATCGTCTTTATTATCTGTCTTGTCTGTATTTgtagtttttgctttaatgatgcCTTATTTCCTAATCGCCACATTGACATTATGTACAATTTCACATATTATTGCAAGGACACATCTGACTGTTGTGTCTGTTTggttatttcattttcttaatctGTGAGATGATCTAAATGAACACTGCCTCAAGAACAAGATTAGATAACGCCAGggtttattaaatatatcacattaaaatgagaaaacttACCTGGAATTAATTTTTATGAAAGGACAATTTTGTGAGTCACCTTTGCTAGTTTGTCTTCCTGTTCTTCTAAAGGATTTCTCAAGGTGCGCAGTTCTGACGTGGCCTGTGAGGCAGAGCTGCTTCTCAACCCGTGCAGAGGAAAAGCTGATCTGCCTTTGCTTTATGTCTATAGCTACTGATCAGCGTTCAACCCAAGTCAGCAGGGTCTGGGCCTGATCATGTTCCAGTGGAGCAGAGGACTTTGTTtccagaaataaaacagtgcaGGTCACTTGGTCTCGAACTGCGTTCAGTTCTGCTGGAATCACCCTGATCAAAGATTCCTAAATAACCATggcagattttaaaaagacaaacaactCAACACATGAGATATCCAGTATCATTATCTATTATCATTACACAAGGGCTTCACAGGTATGGGATATATGGATGTGGAAACATTAAGTGCATATCACAGATTCCTGACATGGTCTGTAGATTATTGTAAATTTAACAAATTGAGTCAGACCGGTGTGCACCAACCACGTAAGGAGTCGAACGTAAGGAATTACATGCATATCACCCACTGGCCCATAATACCCCCCACGTCATACATGCCTGACCTAAGGGATTAGCTCACAGGAAACTGCAGAGGCTACAATATATAGATTAGAATCAAACCATGTTACAAACAGGAAGgttgaagataaaaaaaaaaagcaaaatttccCATATCAGAGCTCTGTTCATAGCGAGAGTGTTCTTCTGCCCTTCATGCATCATACGAGACATGTCCCCGCCTCCTCCGCAGTCCACCCTCCCCCATATTCCAGAATCTTCTCCGGGACAAACTGTGCCGTGCTTATACAGATCTATTTTAATACACTCGACACTACGTTGAACAAGATGaaacttttttatattcttttatcAATGAAcgtgagaaagaaaagagacaaaaagaacatgacaattttttattgtttgccAATTATGCATTTAGCTTGCAATGTGTGATGTGTCCGTATGCTATGAGGAAAAGgtagcaaaaataaaactgaaatggaaAAGGCAACAAGGCTACTGTTAGATGGATGTCTTCGGACTGTCAGAgtagtgttttttctttgtcattatGGAAGGGGACTGTCCAGTGGATAGTATGTATAGGAAAGTGTTTGTCTTACATATGCCAATgtagttttttcttctttatgaTGCATTCAAAGTTGATTGATGGAAGTTGGTAAATGGTAAAGAGTAGTCACACTTTTTTGTACCAAGTTCTTATTGAAAACTGAATCAATAATAAACATGGAAAATTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336181 lncRNA downstream 108750 16838535 ~ 16849762 (-) False LOC113532230
XR_004579992.1 lncRNA downstream 338794 16618712 ~ 16619718 (-) True LOC117599589
TU335948 lncRNA downstream 508746 16448439 ~ 16449766 (-) True G283546
TU335946 lncRNA downstream 508746 16449017 ~ 16449766 (-) False G283546
TU335947 lncRNA downstream 509737 16448439 ~ 16448775 (-) False G283546
TU336452 lncRNA upstream 14751 17041627 ~ 17043280 (-) True G284003
TU336615 lncRNA upstream 480000 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 486734 17513610 ~ 17515240 (-) True G284134
TU336619 lncRNA upstream 494550 17521426 ~ 17523643 (-) True G284135
TU336633 lncRNA upstream 521456 17548332 ~ 17553258 (-) True G284146
XM_026923499.2 mRNA downstream 105117 16839401 ~ 16853395 (-) True LOC113532230
XM_034313042.1 mRNA downstream 141092 16815760 ~ 16817420 (-) True kcna1b
XM_026923299.2 mRNA downstream 186817 16769270 ~ 16771695 (-) True LOC113532119
XM_034313133.1 mRNA downstream 259056 16688373 ~ 16699456 (-) True LOC113531734
XM_026923216.2 mRNA upstream 35892 17062768 ~ 17099329 (-) True kiaa0930
XM_026923621.2 mRNA upstream 92470 17119346 ~ 17193239 (-) True LOC113532299
XM_026922628.2 mRNA upstream 234814 17261690 ~ 17316582 (-) True LOC113531742
XM_026923436.2 mRNA upstream 407566 17434442 ~ 17439078 (-) True sapcd1
XM_026923395.2 mRNA upstream 436079 17462955 ~ 17480834 (-) True slc37a3
TU335292 other downstream 1780899 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 4377449 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 5298185 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 5370488 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 5699120 11238935 ~ 11259392 (-) True vegfab
trnar-ccg_5 other upstream 76689 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 951909 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 951909 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 1043871 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 1056362 18083238 ~ 18083309 (-) True trnaa-ugc_10

Expression Profile