RNA id: TU336618


Basic Information

Item Value
RNA id TU336618
length 1566
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G284134
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17513610 ~ 17515240 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCATTTCTGCATTGGCTTCTCTTTGGTATTTAAGAACGTTTCTCATTTGTTGAGGTTGTGAGAGAGACTGAACACATTCCTCCATGACTGTAGGTGCTGTGCTGAGCATATGGGCAgcctgggggggaaaaaagcagaaaacaacaaaaatatagtCAAAGCCAACCAAGTGTGCTCTGCTTCTTAATTAACTGggcttttaaattattttccagaTCCTTTATTATGAGTGAATGCATGTATAAAAAGAGCTGTACGCAGTTCACCTGGCATGCACGCTGCCGATCTGCACTTTATCTTCATAGTCATTGTCTCAGTTAAAAGTCCAATGAGTCACGATACAGACTGGAACACTGGTCAGTGTATcactgtctatttatttattatctaattATCTATTATCTGACATTTCAAAAAAATTACACttcaaaaaaaatgcaacagccGTCTCATTCCTGGGCTATGACCAGGTGGTCATAAATGCAACCAGTGCAGTTTAggatttcatttctttgtgaAATGATATTTGATTCTATGGAGAGTGTGTATTATGTTATGAATAAGTGTGTTATTAGATTGTGCAGTGCAATCTATTGCTGACGAAAATGTCCACAAGATGATCAGTGGTGCAACAATTATACTTGTACTCTTTATGAAAGCTACAGAACTTTTACtgcctgaactttccaccaacagaacacaaTACGTCCAAGTTGACACTATTTATAGGTTAtgtgttcttgagatattgaCATTTGGACtgaacccattcaattcaagggATTAGTCAAATAGGTCATTAATAATAAGAACTcggtaataaataataatgggtTGTAATTTCGACTtctgtaacaaaataataaaattcacagaccccactttcAGAGCGACTGGTCTAACCTACAGTGCCTTacataaatattcacaaatcaccatccccacagtgaaacatggtggtgggcACATCATGTTGTACTAATGCATTCCATCAGAAGGcactgggaaactggtcagggttgagagTTTGGGGCAAATGGATGACTTGAGACTGGGGtggaggttcaccttccaacaggacaatgatgcTGAGAATACTGCCTTAGCTACAGGGGAATGGTTCAAAACTACGGCACTATCAAGGCCGCCTCTTTTTCTAACAATGAGTCAAAGAGatgaggaaaaaacatgaaGGTCCTGCACAGACCCCTAATCTGAAAAGCTGGCACTTTCTACAATACAATTCCAAACTCTAATTCATTCCCTGCAGTTGTGATTTAATCTTGGCTGATTGCTTACATAGCCCTGACCATAACACACCCTGATGCAACAAAATTGATCACACCCATTTACATGACTAACCCACCTAGAGCAAATCCATGAAGCTCCTTTCTTGTCATCAGCACAGAATAAagacatgaataaaaaataactacTTACATAACGACGTACTACTACTATGATACTGTCTTAATACCTCCTCCATAGTAGGCTGTGGGAGAGCATTTTCTAGTCTAGACAGGAACAGCCACATCAGCTTCTGTAACGCCGTATTGAACTTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336615 lncRNA downstream 6465 17506876 ~ 17507145 (-) True G284131
TU336452 lncRNA downstream 470330 17041627 ~ 17043280 (-) True G284003
TU336181 lncRNA downstream 663848 16838535 ~ 16849762 (-) False LOC113532230
XR_004579992.1 lncRNA downstream 893892 16618712 ~ 16619718 (-) True LOC117599589
TU335948 lncRNA downstream 1063844 16448439 ~ 16449766 (-) True G283546
TU336619 lncRNA upstream 6186 17521426 ~ 17523643 (-) True G284135
TU336633 lncRNA upstream 33092 17548332 ~ 17553258 (-) True G284146
TU336631 lncRNA upstream 43167 17558407 ~ 17564955 (-) True G284145
TU336632 lncRNA upstream 43167 17558407 ~ 17561807 (-) False G284145
TU336663 lncRNA upstream 79413 17594653 ~ 17594899 (-) True G284165
XM_034313293.1 mRNA downstream 7113 17498388 ~ 17506497 (-) True LOC113531974
XM_034313292.1 mRNA downstream 8156 17498388 ~ 17505454 (-) False LOC113531974
XM_034312988.1 mRNA downstream 18823 17486811 ~ 17494787 (-) True LOC117599443
XM_034313145.1 mRNA downstream 28189 17484558 ~ 17485421 (-) True LOC117599538
XM_026923395.2 mRNA downstream 32776 17462955 ~ 17480834 (-) True slc37a3
XM_026922642.2 mRNA upstream 75880 17591120 ~ 17594317 (-) True ckap4
XM_026922984.2 mRNA upstream 96650 17611890 ~ 17616249 (-) True LOC113531978
XM_026923555.2 mRNA upstream 280644 17795884 ~ 17809289 (-) True gnsa
XM_034313218.1 mRNA upstream 392388 17907628 ~ 17971244 (-) False ano2b
XM_034313216.1 mRNA upstream 392388 17907628 ~ 17971244 (-) True ano2b
trnar-ccg_5 other downstream 409973 17103565 ~ 17103637 (-) True trnar-ccg_5
TU336422 other downstream 548723 16958524 ~ 16964887 (-) True phf21b
TU335292 other downstream 2335997 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 4932547 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 5853283 11657890 ~ 11660327 (-) True G281092
TU337036 other upstream 463545 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 463545 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 555507 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 567998 18083238 ~ 18083309 (-) True trnaa-ugc_10
trnaa-ugc_11 other upstream 568543 18083783 ~ 18083854 (-) True trnaa-ugc_11

Expression Profile