RNA id: TU336869


Basic Information

Item Value
RNA id TU336869
length 2896
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G284349
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17895335 ~ 17898230 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAAACAAGAGTTAAGTGTCATTGCATTAAATGGTTGGCCTTTTTTTCTCACAATGATCCTTCAAGTATCATAGACCAAGATGAAGCATATTTAGCCAGATAACTGAAGAGGgggacaaaaaacaaataaagttgGGACATCAGGTCAGTAAGGGTGGATTAAACGGAAAGACTTCACTAAACAAGAAACATCCAACATACATGTCTTAATCTTATTAAAATAGAGCTCTGTTATTGGTCACAGTTAACTCAGTCTTGATATACCcagaaagaaaatgacatttaaaatatcAGGTGGTCCATGAATCGAACATTTTGGCACATTCTCCTTTTGAAATTATAAGTATTCATCAATAAAAAAGAGAGTACTTGTCCTTGGATTTCAGCATTTGCAATGGTTCCATGATCATGGTCATCATAATTAGTTAAAGCAGCAAGAATTGTATACAGTATGCACTACAACAGCAGGGCctttcacacacagtacaatACATGTTGGAATGTGGCACTGGATGAATTAAAGACAATCCAAACATGAGCAAAGTCAAGGGTGTGTATGGCTGCACGCCTTCCCGACTCCAGTGTTAGATTCAGCAACAGGAAAGAGAATGTGTTCAAATGAATGTGTAGGCTCATTCTCTAGAGCTTCCAGGGGAAATAAGAGCAAAGTGAGTTCCTGTATTCTGTGTACTTTCTTCCTATAGTTCCAGATAGAAATGGAGGAGGCATCCCATTGGAATATCAAAAGAAATGCAGGACATATCCTGTTCTGTTTATAATGTTAGCTGACATCTGAATGGTGTTGAACTCTCTTATACACTCACACCCAAAAATTCACTCGAAGCAGGCAGAGTTTGTCAGTCATATTTTGACTGGCCTAGAGAGCCTTATCTGGTTTAATCAGATCCTCTCTTgatatttctttgtatttttaaatgcaccATTAACAAGTATTTAAGTACAATACAATAATTATTGTTTCATAGCAATGCATACTTTGatacaaatatgaataatgACCTTTGCACTCCTGGCCTTAAaagaaatgtaacaaaaatcCTGTATGTATTTTTGTTCCAAGCACATTGCTTGCAAAGCTAATGAAGACcttaaatgcttaaaaacctttaaaaaaccAAACATGTAAAGAACACTACAGTAGTACTATTTCATGTGGATTTATAGGGTACAGGGTTTCTTCCATGACCCTATAGGATGTTTAGGGGCTGTTATTACAGTCACCTGAGATACCAGGATGGACCTGTTTAAACATAGCTGACCCCTGAGCTGTAAAGCACCAGCTTCTTGCCCTTTTATATAGTCACTCAAGTCCTCATAAATGCAAAATTTGCACccccttatatatatatatttctggaaACTTTTTCTCTAATAAtagaaaatacttttttttccctctgctcCCATTCATGGTCGCCACAGCAAATCACCCATCCGCATATTTCAGTTCTGGCACaagttttacaccagatgcccttcctgatgtaACCCTCCCCATTTTCTGGGCTTGGGACTtacactgagagtgcactggctCATGCAaccctccagtggctggggaattgaacccaggccATGGCAGTGAGCGCGCCGCATGCTAGCCACTAGTCCACcaataatagaaaataatacaaatataaaaaggtCCTATGAGAGACAACGGCATATTGAAGTGTACATAGCCTGACTGAATTACTAGCACTattatctcagaatgcatatgTGGAACTGGTGTGGACTTTTCAGGACGATAACATGGTGGCAACCTGTCTGTATATCCTCTAAAAGAGCCAGGGGAATATTAAACAAAAGTAAGTTAAAGTTAAATTCTAGGTGGTACATTGCCTAGATATTAAATTCTAGGTGGTACATTTGCTGTGAAATGGACCCTTTCTTTTAAAGGACATGAgctattttatttgtgtgtggtgtaaaaaaaaaaaaaaaaaaaaaacaagcctggGATTCAAACATTGGTTCCACAGTGTACAACCTGTTGGTCATAACTACCACGGGATGACTACCATCGGATCAAGCGTTTAgcagttcattaaaaaaacatctgttgTGATTTTATATGCTTATTTGTGGTATAGAGTGAACTGTCATAGGTTAGGACAGGGCAGACAAGTAATGGAAGCCATTGTGACCAGTTTTATATTACTATACCCAGTTCCAAACTTTTTGGTAACCAGATGTCCTTGTAAAATGAAAGAGGGAAAttttttgaatcttttttttatatataaggaCTATGTAAACAGCATAGCGCAgtggaaacaagaaaaaaactgttGGGAATATCAATATTTGCTTCAGAGGTGGTGGTAATGTACTAAGAACAAAACCCTACTAGTATCAAGAGACTAGATACCACATATATATTGTCACCTACcaaaaagggagagaaatcaGCTAGTTTTCTTTATCGTTAAAAAGTGATAAGCCTTAAAATAATCCCAAGAAAAGCAAACTCTCTTAATGTTACTCAAATCCCAGTATGTACACTATCTTAGTACAGCTTTACTCCTCTGTGAGAGTAAATCTGTCATTAATAAAAGCCAGTTTAGTGGCAGTTTGTTGGCTTGCTGCTGTTGTTCTGCTCTAGAGTGATTGGAAAATGAACCATTGGGGTAGTACTTGATTAACAACTTGAGAAGAAGCAACTGTGCCCTCAAGTGAGTCTCTGGTAAACTGGATAGGGTATTTGTACGCGGTCTGTGTAGCCATTATTCCTCCATTTGGCGAAGAGTTTTATTCAGTCAGCACATCACAACCTTCTACCTCTTTACCATCCTTCTAAATTATATATGAAGTTAATGCCTATGCCcgatgatgttttttttttaaaagttgatCTTAATGAGTCTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336843 lncRNA downstream 44441 17850457 ~ 17850894 (-) True G284323
TU336815 lncRNA downstream 104572 17790534 ~ 17790763 (-) True G284295
TU336814 lncRNA downstream 130406 17762031 ~ 17764929 (-) True G284294
TU336792 lncRNA downstream 177097 17717905 ~ 17718238 (-) True G284273
TU336663 lncRNA downstream 300436 17594653 ~ 17594899 (-) True G284165
TU336874 lncRNA upstream 2795 17901025 ~ 17901267 (-) True G284352
TU337033 lncRNA upstream 129504 18027734 ~ 18029915 (-) False ahcyl2b
TU337055 lncRNA upstream 190424 18088654 ~ 18088942 (-) True G284520
TU337057 lncRNA upstream 193987 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337106 lncRNA upstream 282149 18180379 ~ 18184992 (-) True G284559
XM_026923555.2 mRNA downstream 86046 17795884 ~ 17809289 (-) True gnsa
XM_026922984.2 mRNA downstream 279086 17611890 ~ 17616249 (-) True LOC113531978
XM_026922642.2 mRNA downstream 301018 17591120 ~ 17594317 (-) True ckap4
XM_034313293.1 mRNA downstream 388838 17498388 ~ 17506497 (-) True LOC113531974
XM_034313218.1 mRNA upstream 9398 17907628 ~ 17971244 (-) False ano2b
XM_034313216.1 mRNA upstream 9398 17907628 ~ 17971244 (-) True ano2b
XM_034313217.1 mRNA upstream 9398 17907628 ~ 17971227 (-) False ano2b
XM_026923553.2 mRNA upstream 9398 17907628 ~ 17954657 (-) False ano2b
XM_026923554.2 mRNA upstream 9398 17907628 ~ 17949378 (-) False ano2b
trnar-ccg_5 other downstream 791698 17103565 ~ 17103637 (-) True trnar-ccg_5
TU336422 other downstream 930448 16958524 ~ 16964887 (-) True phf21b
TU335292 other downstream 2717722 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 5314272 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 6235008 11657890 ~ 11660327 (-) True G281092
TU337036 other upstream 80555 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 80555 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 172517 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 185008 18083238 ~ 18083309 (-) True trnaa-ugc_10
trnaa-ugc_11 other upstream 185553 18083783 ~ 18083854 (-) True trnaa-ugc_11

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU84550 True 1615 lncRNA 0.39 1 NC_035903.1 7949838 ~ 7951452 (+)