RNA id: TU337055


Basic Information

Item Value
RNA id TU337055
length 289
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G284520
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18088654 ~ 18088942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTATATCCTGAAACTACTTCCCTCTAGCAAGCAGTGAATGTTGTTCTAACACAAGTGACATGCTTTAGGCTCAGTACCTTCACAAGTTTTCTCCATGGTCTGCAcgtgttttttcattttcatcattccAGTTTCTGATATGTTTTGTAATGAAGTACTCTTTACAGGATTAAAAGGAGCCCTGTGGAGATGCCGGGGATTGAACCCGGGGCCTCATACATGCAAAGCATGCGCTCTACCACTGAGCTACATCCCCTGCATGCGTTGTCATTAAGGCTACCCGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337033 lncRNA downstream 58739 18027734 ~ 18029915 (-) False ahcyl2b
TU336874 lncRNA downstream 187387 17901025 ~ 17901267 (-) True G284352
TU336869 lncRNA downstream 190424 17895335 ~ 17898230 (-) True G284349
TU336843 lncRNA downstream 237760 17850457 ~ 17850894 (-) True G284323
TU336815 lncRNA downstream 297891 17790534 ~ 17790763 (-) True G284295
TU337057 lncRNA upstream 3275 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337106 lncRNA upstream 91437 18180379 ~ 18184992 (-) True G284559
TU337140 lncRNA upstream 257511 18346453 ~ 18346836 (-) True G284590
TU337354 lncRNA upstream 609979 18698921 ~ 18747804 (-) False LOC113532190
TU337444 lncRNA upstream 731000 18819942 ~ 18823200 (-) True G284862
XM_034313388.1 mRNA downstream 6293 18068598 ~ 18082361 (-) True tmem209
XM_026922878.2 mRNA downstream 21069 18028287 ~ 18067585 (-) False ahcyl2b
XM_026922877.2 mRNA downstream 21069 18028287 ~ 18067585 (-) True ahcyl2b
XM_026923724.2 mRNA downstream 65182 17990629 ~ 18023472 (-) False strip2
XM_026923721.2 mRNA downstream 65182 17990629 ~ 18023472 (-) True strip2
XM_034313059.1 mRNA upstream 8685 18097627 ~ 18106446 (-) False slc5a8
XM_026923816.2 mRNA upstream 8685 18097627 ~ 18106446 (-) False slc5a8
XM_026923815.2 mRNA upstream 8685 18097627 ~ 18106446 (-) True slc5a8
XM_026923382.2 mRNA upstream 48853 18137795 ~ 18141774 (-) True arl1
XM_026923367.2 mRNA upstream 56930 18145872 ~ 18156560 (-) True tnnt2e
trnaa-ugc_11 other downstream 4800 18083783 ~ 18083854 (-) True trnaa-ugc_11
trnaa-ugc_10 other downstream 5345 18083238 ~ 18083309 (-) True trnaa-ugc_10
XR_004580005.1 other downstream 6293 18070747 ~ 18082361 (-) False tmem209
TU337036 other downstream 108408 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other downstream 108408 17978785 ~ 17980246 (-) False LOC113532261
trnaa-ugc_13 other upstream 1609 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_14 other upstream 3531 18092473 ~ 18092544 (-) False trnaa-ugc_14
XR_003403330.2 other upstream 67882 18156824 ~ 18187998 (-) True cald1a
trnae-cuc_38 other upstream 123380 18212322 ~ 18212393 (-) True trnae-cuc_38
TU338301 other upstream 2224125 20313067 ~ 20320050 (-) True G285607

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_09884959_09889794.mRNA True 1615 mRNA 0.37 5 CI01000006 9884439 ~ 9890289 (+)