RNA id: TU337106


Basic Information

Item Value
RNA id TU337106
length 4591
lncRNA type intronic
GC content 0.39
exon number 2
gene id G284559
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18180379 ~ 18184992 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGATCCTGATTCTCGGTTCTCAACTGTCTTGAGACAAAAGATACTATCAAACAATATTGTGTTCTGTTGTGCAAAAACACTTTCGATGCGTATTTGTTCTTGTAATCAAACATCAAATCAGCGTAGTCTAAACCACACATCATGTCGTTATCCCCATCCATTCAACCATCACCGGGATACACAGCGCAAGAGCCAAAGTCATAGTCAGATGTTTTTTTCAGTCTACATAATATGTTTTGTCATCTGGCCAACTTGTTCAACATTACTAGTGTTGGCTGGTGGAGTGTATAAGTCCACTCGTGTTATGTCTCGGTGGAAGTGTTGGAGTGGGAGTCTGTAACAGCAGGAGGGCAGATGTTGCGGAGGAGCTGACGAGAGCGAACGATAAGCCCTGTGCACACAGGAGAACCTTGGCATCGGAGTCCACCTGGAACATCGTCAGGCGATGAAGGCTTGACAAGTGCCATTTCACTCCTCCATCTGAGATGGCCAAGATTCTGTCTgcttgagaaagagagagcgagagacttAGGGCTCTGTCTAATGTCAGTCACAGCGAGCTGAGAGTAGCCCTATGTGGTTGCAGCTTTTTCATATAATTACATTTTCGGATAACTGCCTAAGATTTTATAATGGATTTTCATCATATCTTGTACCACCAGCATCTGTAAATGAGGTTGgcttgtagagagagagagagagagagagagagagagtattgaTGACTCTGATAAGAGTATGTGTAATATTAAGCATGCATTAAgcatgttttagtgttttaaacattttgcagcaAGCCATCCCTTTAGGCAAATTAGTACACTTCTGTTTTTACTGGAGCGTTTCAAGTTTCCACCCAAACCAGTTACACTGTGGTAAAATGTTGATTTTGACAACAACAATTTTCCTAGATTTAATAAAACTGCAGTTAGATCTAATtcaacattatttatacttgttttGAAGTTATTAAgctttaaataatttactttagATTTAAATGTTAATCAGTTACCTGATTTCATGATGAAAATGCAACGATAACTAAAAATTCTCCCTTGTTCTCAAAATCTATGTCTAATTGTTATGAAATTTTCctcaacaaagaaaaacaagttaAAATATCAGTTTGACAGAGTTTATTTATGCAGAATAGTAAATGTGCTTACttagtaatattattaaatgcatAGATATTATATTTACTCTTTGCACTCTTAAAAAActatttggggggaaaaaagcaaaacggagtaaaatatttagttttttagttttcattgaCTAAAATAGTTGACTTTTAAGTGACTAGAATTGCTGtaaattttttgttaaataaaactaGACTAAGGCTAACAGTAACAATCaccaaatgactaaaatatgaataaaactaTTGTTTTGACAGAATGACTAAATCCAAATTAGCTGCCATAAGCTGACCTGAATCACattaaatatgcttttattgaaatatttgtgatgtgcttaaaGATTCTGGTGCTAGATcattggttggtgctgtatgtttgttattcccatgagaagttagtggttgtcTAATGCAGTTACATTAGTGTTTAATATGAGAAAAATTTCAACAGACATGAGGAATATTtatcaggtttcactgttagctcctaaacacaaaagagcaagagtttttttttctcactcgccattttacagtgatgttcaaagtcatattaatgagattTCAATGGTGTAGTACTGGAGACAGCAAACATTGTACTCAAAGCtccagaatgcattgcagctGTATGACACAGCTGCACTGTGTTATAGCACTTCACTCGAATAGCAGTCTACGAGATGACAACTATGGTAGCGTTGATGCCAATTTTAGCATGacagttgaagctttggaagctgatctgtttgagtcGAATGTACaaatgaggaggtgagagagagccGGACAGATCTAAAGTACTAAAGtacgctgcatcgctctctttagttGGAGATGAAGCAAGAAATAAATCCCATTGACACCTTTATCAGCTGGTTGTCaaaaggcattgtgggtaatagaCCAACATATCATTGAAATAAGCTTAaatcaaaaaatttttttttttttataaaataaatcttagatGCCATTGAAGATcatgtgttaattataaagattaatgtgCAGGTCATTCAGGGTGaataaataactataacaaCTTATTAGTAACATGATAGCAGTGATAATGAGCTCCAGAGTAGTCACGTCATTAAATCATGGATTCCCTGGCTATACGTCACAGAACTCTGGAACCACTTTGAGAGCGATGGATATAACAGCTACATGCTCCTACACAGCTCCATCTGCTGTAGTCTTGATAAGCAGCCACTGAACTCTTAAGGCGATTATATGAACCGCTAACATTAGAACTGTTATTACAACTGCAGCCTGTAGTGTGTCGAGTGCAGTGTCTTTGAGAATTGAGCTTCTTTGAGAGGGATAATGTTGGCGCAGGTCAGAGGTTGTGCAGACTCCATGGCCTAGGGCTgtgtttccctctctctttccctctctctctgtctttctcactctcttataTGCATACTTCTCCCTCTGTGACTGTCGTGGCCTTTCCCGATCTGGAGCAAGCAGTTCCAGCACAGAGACGGGTCAGCGACACTCCACATACATACACTGTGTAATGTTTTGTCTGTTCCTTATTGCTCTAATACAAAGTTCTGGAGAGTTATGACAAGAGCATGGCAAGTTATGACAAGAATGTGTTTCAGCTGTGTGCATTTGCCTGCTTTAAATCTTTACTGCCAATAGCTTTTGCATTTCTGTCCGAGGATGGTATGACTTGTTGCTGAGAGCTTCGTCTTCTGCGCAGCGGGCATTTTGATCCCACACATCTGCACTGTTTTCCCATGAGAGGCCAGGAAGAGCTCAGGAAATAACACCCATCCTCAGCGAATGGGCCGTTCCATAACTACTCTCCCTGCACCACTAAAGCTTGTGTGTATTAGAcagatggaggaagagagagaaattggAAGAAAGACACCAACAGACGGTGGAATGAAAGACTCCGGAACAGTCTCTCTCTGAACACCGAATTGTTTTTATTAGCTTGTAAATGACAGAAGTCTGATCATTTCAGACCACCTTAACTTTGAGAAGTTTTATGCACATCTCAGGGACTGTAGGGAAATGGAAGCAGAAAAGGAATATACCAGATGAGCAGAGAGTCTGTGAGTGCAGTGGGAGAAGAGGATAAAGTGGGACGAGTGTGGGAATAGGGCAGGCTTTTGGcacaagctctctctctctctctctctctctctctctctctctctcactctctcagacCTTGTGTTGTTGCTATGTCAAACCCCACTCACAGCggcctttcccaaactgttttTCTCGGACATTTCTGAGATGTTTGAACGAAAGGAAAATATTTGGGAATGCTAGTCAACACCATGTCCCACTCTACAGCCATTTCCttctttacagattttataAAATCAGTAAAAGCAAGGCTCAGACTGCCCAGTGTTCACCACAAAGGCTATTAAATGAAAACTTTAACCTAATCGTTATCTGTCCCTTCTGGAGCATATGTCTGATTAACATGGACATGAATTTCAACACTGACAATAGAACAACTTATGTTGGAAGCCTAGGGGCAGTTGTCAGTTAAAACATGCCACAACATTacacaaattcaaaactacaacCCTTACACTCTAATATTAGAATACTTTTATGAAAAGCCCACatattgaattatttgtgatgtgcttagtgacTCTGCTGCTAATTTGTGGGGTGATACTGAAGTTTTGTTAGTCTaatgagaagttagcagttatCTGCTCCACTGATGTCCTGGGGAAAAATTTAACAATCTCCAACATAAGAGATTTTGCTATTAACTAATACAAAAGAGTAAGAGCACCTTTTCTCACTCACAGTAGTCGAGACAGCAAACACTGAATGTATTGCATTAGTTCCAGAATGTAATGCAGCTATACAACAGAGTTATGCAGAGTTATGGCAGAGATTAGGCTCAGattagctagttagcgatctacaagATGATCTGTTTAAGCAGAGTGTACAGGAgagagactaaaggactaaagtgctgctgcattgctGTCTGTAGGTAGACAGAAGCAGAGGCTAAATCTCACTAGCACCACTATCAGCAAGTAGTCAAGTGGAtttatgggtaatgtaggagCTATTAACAATAAaccaacatgttgatgaaagaattataaactaaaaataatcaactcataatttcagtacaaaataaatcttagatgccattgaagatcacatgtgAGTTATACCAgtgataccagtgatcctgaccccttctgctcttcggacctgcctgatccatcctgatgccctacttctggttgggattctcatcaattggaaatcacttgctgctgctgaagacagcccacatggacagcctgaagatcatcaAGATTACTGtagatggtaccacttaaaaaccatgaagatggctttggaccacaattTCTACAGTAGCTTTTGGACTGCAATagccacgaacagttttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337057 lncRNA downstream 87840 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337055 lncRNA downstream 91437 18088654 ~ 18088942 (-) True G284520
TU337033 lncRNA downstream 150464 18027734 ~ 18029915 (-) False ahcyl2b
TU336874 lncRNA downstream 279112 17901025 ~ 17901267 (-) True G284352
TU336869 lncRNA downstream 282149 17895335 ~ 17898230 (-) True G284349
TU337140 lncRNA upstream 161461 18346453 ~ 18346836 (-) True G284590
TU337354 lncRNA upstream 513929 18698921 ~ 18747804 (-) False LOC113532190
TU337444 lncRNA upstream 634950 18819942 ~ 18823200 (-) True G284862
TU337448 lncRNA upstream 645933 18830925 ~ 18831139 (-) True G284866
TU337464 lncRNA upstream 676853 18861845 ~ 18862152 (-) True G284882
XM_026923367.2 mRNA downstream 23819 18145872 ~ 18156560 (-) True tnnt2e
XM_034313350.1 mRNA downstream 23819 18145977 ~ 18156560 (-) False tnnt2e
XM_034313349.1 mRNA downstream 23819 18145977 ~ 18156560 (-) False tnnt2e
XM_026923378.2 mRNA downstream 23819 18145977 ~ 18156560 (-) False tnnt2e
XM_026923371.2 mRNA downstream 23819 18145977 ~ 18156560 (-) False tnnt2e
XM_026923734.2 mRNA upstream 40508 18225500 ~ 18233739 (-) False tnni4a
XM_026923733.2 mRNA upstream 40508 18225500 ~ 18233739 (-) True tnni4a
XM_026922920.2 mRNA upstream 299448 18484440 ~ 18593405 (-) False dock4b
XM_026922918.2 mRNA upstream 299448 18484440 ~ 18593405 (-) True dock4b
XM_026922919.2 mRNA upstream 302031 18487023 ~ 18593405 (-) False dock4b
trnaa-ugc_14 other downstream 87835 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 89757 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 96525 18083783 ~ 18083854 (-) True trnaa-ugc_11
trnaa-ugc_10 other downstream 97070 18083238 ~ 18083309 (-) True trnaa-ugc_10
XR_004580005.1 other downstream 98018 18070747 ~ 18082361 (-) False tmem209
trnae-cuc_38 other upstream 27330 18212322 ~ 18212393 (-) True trnae-cuc_38
TU338301 other upstream 2128075 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 2237409 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 3275834 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 3275834 21460826 ~ 21471056 (-) True LOC113544587

Expression Profile