RNA id: XM_026923414.2


Basic Information

Item Value
RNA id XM_026923414.2
length 803
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC113532190
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18698921 ~ 18747833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGGAAGATCATATGACCCACAGTGATCACAGGAACAAACAACGAACAACATGGCGTCTTCATTGACTCCCGCAAGCGTGTTGGCGGTGCTGGGTTTCTTCTTCCTGAGTGTCCTGCAGCCCGTGGAGGCTTATGACAGCGGGGACGCCGTGGCTCTGCTCTTGGGGATGGCCATCACGGTGGTCGGCTTATGCGCGTGCCTGGGCTGGTACTCCCGGAGACGCAGCGGGCAGTTCTGACACGACATGCAGGCCTGTGGTCCGGAAATGTCGCTTCTCGCCTCCTGAAACCCCGAAACGCCGCGCCAGCTGGTCGCTCTTTCCTGAACGTGTGGCGGCTAACAGACTCTTGACACTATAGtggaaggagaaggagaaggagactCGACTCCAGGGTCCGAGTTacaaagagggagagacagtATGCTGTTTAAAAGCCAACATGCACTTccagtggacacacacacacacacacacacacacacacatacacatctggATCATGGCATTCAAGCACCTCTGTACAACATCTGGACTTCCCTATACTTTGTTATACGATGACGTCCATCATTACACGACTCcactctcttcttttcttcttgctatacacacagctctgtcattCCACTGTTCCCTGAAACATGTGCCCTGAGGGCATTCTTCAGATTTTTATGCACTGAAAGTCATGTTGCCCCTGCTGTTTTGCACTTAAACtttgtgctcttaatatagtgaaCTATACTTGAAGGGTCACTGTTTCTTGCATATgcttattttctgtaataaactCCATGAATGCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337140 lncRNA downstream 400195 18346453 ~ 18346836 (-) True G284590
TU337106 lncRNA downstream 562039 18180379 ~ 18184992 (-) True G284559
TU337057 lncRNA downstream 654492 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337055 lncRNA downstream 658089 18088654 ~ 18088942 (-) True G284520
TU337033 lncRNA downstream 717116 18027734 ~ 18029915 (-) False ahcyl2b
TU337444 lncRNA upstream 72109 18819942 ~ 18823200 (-) True G284862
TU337448 lncRNA upstream 83092 18830925 ~ 18831139 (-) True G284866
TU337464 lncRNA upstream 114012 18861845 ~ 18862152 (-) True G284882
TU337468 lncRNA upstream 120224 18868057 ~ 18938095 (-) False G284885
XR_004579967.1 lncRNA upstream 170563 18918396 ~ 18922870 (-) True LOC117599567
XM_026922762.2 mRNA downstream 2869 18739775 ~ 18744162 (-) True gpr85
XM_026923597.2 mRNA downstream 71464 18665209 ~ 18675567 (-) False tmem168a
XM_034313317.1 mRNA downstream 71586 18665209 ~ 18675445 (-) False tmem168a
XM_026923598.2 mRNA downstream 71885 18665209 ~ 18675146 (-) True tmem168a
XM_026922920.2 mRNA downstream 153626 18484440 ~ 18593405 (-) False dock4b
XM_026922985.2 mRNA upstream 33914 18781747 ~ 18787897 (-) True ppp1r3aa
XM_026922669.2 mRNA upstream 347559 19095392 ~ 19107426 (-) False tfec
XM_034313021.1 mRNA upstream 347563 19095396 ~ 19103077 (-) False tfec
XM_034313020.1 mRNA upstream 347563 19095396 ~ 19103077 (-) True tfec
XM_026922670.2 mRNA upstream 347564 19095397 ~ 19105351 (-) False tfec
trnae-cuc_38 other downstream 534638 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 559033 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 654487 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 656409 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 663177 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 1565234 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1674568 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2712993 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2712993 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2712994 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile