RNA id: TU337444


Basic Information

Item Value
RNA id TU337444
length 907
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G284862
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18819942 ~ 18823200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAATCTGTGTGAGGAGCTACGGCTCCGTTCGCACCTCCTCCGCTAGCGCTGTGCTCCGAAAGAGCGGCAGCACACGCTCACTCGCTcccacacacgcgcacacacacgctgtgCCTTGCTCGCTCCTGCTTTCCGACTCGTTTGGTTGCGGGGATTTAACAAACGCGTGGCGCTGCAGGAGGATGCTGGGGCTTCCTGTGATGCTCCCGGAGAAAGCTTTGGACTGCCAAGGTCAACGAGGACGAACAATCCCAGTAGCGGCACTTGAGCAGTGGCAGAAGAAAGCGAGCGGCTGGTGGGTGGGGGGAAGGAACCGCTGGCATGCGTGGTGGTCACCGCTATGCCGCTCCAGCTCTCAGCTCTCTACATGCGATGGCATCATTTCCATAGCAACCCGCTCTAACGATTCATTTTCAATTAGAgcagacacaaaacacactgcccTGAGCCAGTAGGCAGTGTCAAGAGCCCATCTCCATCTTCCTCGCCCCCACATGGGGGGGAGTGATCCAGCCTCTTCGAGTCAAAGACACCAAGCTATCTTACAGTAATGCTCAAAATCCACTCGTTCAAATCAGACTCATATTCACATCAGTGCAAAAATCAACGGCCTGTTAACAATTAACAGAGATTTAATGCTATAGTGTTTACTGTGAAATACAGATGAATGAACAAGACTTGAGCGAGGCAGGGCTTGTGTGCAGTCACTGAGAATGTGATGTGTTTCAGGCCTTTCAGAACTGCCACAAGCAGCAAAGCTGTTCTCTCTGGCTAGAGAGTTATGCACTTGAGTTCATATCCACCTCCAGTCTCCCTCCCCGCTGTGCAGCTGATGTCCGATCTGATGCTGTGCATGCTGCACTTGTAAACACTGCCCTAATAAACTCACCGGTGTGGTTTCTATCT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032502 developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337354 lncRNA downstream 72138 18698921 ~ 18747804 (-) False LOC113532190
TU337140 lncRNA downstream 473106 18346453 ~ 18346836 (-) True G284590
TU337106 lncRNA downstream 634950 18180379 ~ 18184992 (-) True G284559
TU337057 lncRNA downstream 727403 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337055 lncRNA downstream 731000 18088654 ~ 18088942 (-) True G284520
TU337448 lncRNA upstream 7725 18830925 ~ 18831139 (-) True G284866
TU337464 lncRNA upstream 38645 18861845 ~ 18862152 (-) True G284882
TU337468 lncRNA upstream 44857 18868057 ~ 18938095 (-) False G284885
XR_004579967.1 lncRNA upstream 95196 18918396 ~ 18922870 (-) True LOC117599567
TU337489 lncRNA upstream 95256 18918456 ~ 18922897 (-) False LOC117599567
XM_026922985.2 mRNA downstream 32045 18781747 ~ 18787897 (-) True ppp1r3aa
XM_026923414.2 mRNA downstream 72109 18747031 ~ 18747833 (-) True LOC113532190
XM_026922762.2 mRNA downstream 75780 18739775 ~ 18744162 (-) True gpr85
XM_026923597.2 mRNA downstream 144375 18665209 ~ 18675567 (-) False tmem168a
XM_034313317.1 mRNA downstream 144497 18665209 ~ 18675445 (-) False tmem168a
XM_026922669.2 mRNA upstream 272192 19095392 ~ 19107426 (-) False tfec
XM_034313021.1 mRNA upstream 272196 19095396 ~ 19103077 (-) False tfec
XM_034313020.1 mRNA upstream 272196 19095396 ~ 19103077 (-) True tfec
XM_026922670.2 mRNA upstream 272197 19095397 ~ 19105351 (-) False tfec
XM_026923199.2 mRNA upstream 317245 19140445 ~ 19161281 (-) True lta4h
trnae-cuc_38 other downstream 607549 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 631944 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 727398 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 729320 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 736088 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 1489867 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1599201 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2637626 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2637626 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2637627 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile