RNA id: TU337467


Basic Information

Item Value
RNA id TU337467
length 3177
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G284885
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18868057 ~ 18938095 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggagagaaagataaaagaaCTGAGAATGATTTTCAAAAGAATGTAGTACAATGAATACTGACAAACAATATCACTTTGAATAATCTAATAAAGAAAACTTAACATACATTATTATGTTAAAATGTGACATTATAACGGTACTGGAAAACTGGACCCTGCTTGTACATATGAAAggataaatatgcaaaaactaaaaaaagaaaaaatgtattcacATTTTGTCATATAAATTTTGGCACCTGCATCCATAAAAAtgggtttgtttgtgtgtgtgtggtttttttattttaaacatttacagatacAGTTTGTTGAAGAAGTGCTGTGTTATTTCAAGTGTTTCATACACCAAGCAAACTACTGGTAAATTTAGGGTTATGAATCACTCGTTACATTAAGtatccaggaaaaaaaatgtaattaccaAATTGGCATATATCTAACAAACACATTTACCCTGCAGTGACTCAGAGCTAAAACATAAAAAGTTAGTTTTACTGAGTTTTGTTTGTGCTCTCAGAGtcttgagattaaaaaaaaaaacgcattttAGTGCATCCAACATTGCTATTTTCTAATTCCAATCCTATCCCTCTTTGAAAAGTGCAGTTTAGCAAGTATGTCTTTTACATTTAACAGAGATGAGTcagttttcacaaaaaaaacacaaacaagtcgTACCAAATGTATCAATACAACATATTGGCCCTTATTTATCAAAGTTATGAAGACATGAGCACAGATTTCAGTGCACAGAATGACATGACTGAGATTGCGTCTCAGTGATTCAGGAAACTGACGAACGACATCAAAATGAGTGGTGACTTGGCACAAATGATGAATCAGCTTCAGATGTGTGGAATAAAGCTTCCATGCACTAGTCCCTTAATTTGCATTATATGCTGCATACCTCAATTTACCCTCATATGCCTTATTTATGCTTCTACACTAAACCCCATTACCTATATTTGTGTACGAGGTTCCCATAATCACAAATGTACTCATACTATTCTACttattataattgttataattattgatAATGTACATTTTGATGATTTAACTGCAAATCAAGTACTTGTAAAGTGTAACgctcacattttcacacactctGACCAGATGAGAGCCTGATCATACTGAGATACCAAAGATGAAATCGATGAATAAGGAAACTGCTGATGGAATCTGCATGCACTACTTTTTCAATCAGATTTGACTGTAAGCAACATTAATGAATAAGGGCCATTATGACAATAAAATGTAACATGAAAATcaattaaatcatttcatcTAGATTAATGACTACACGTACAACCAATCTCAAAAATGCTGGTTCAGGAATGTATATTGTTTTGAATAATATGTCCAGTATTTAAGAGAAGAATGTGCTATGCTTTTACATTAGCAGAGGTTAAAAAGaaagtttctatagtaacgaacACCAAGACTGTGTGAGAAAACACCATGTCTGGTTACCAAATAAGgagaaaaatgaatatgaatgggATTAAGACTTGTTAAACTAACCTAAAACAAAGGACTGTCTACACAGAAGATCCTATTCTGTATGATATTGGGGTTTTTTTATGTTCATACTTGAGTCATAATTCATTATTGCTTATTACACCTTCTAATCACACTCAAAATTATGGACCTGTAATGAATCAAGATACAGTAGACAACGCTTAAAGAAAGCTTTACCAAACAGACgactaaaaaaaaaccaggcTTGTTGagtaagttaaaaaaatacCCATAAAACAcgcacagagccttgacctctGCCGTATAAGAGAGTCACGAACCTGTGGAAATTACAGTGTTGTTTTAGAGCATAGTAGTTTAAAGCCTACCCTAATGTAATCTACAGTAATGTAATCATGGTTTAAACTGAGTAAGACACGAAACACCAATGACAGACTGTCAAAAAAAGGACATCTCCAGAATTACTGACATGattcatgaaaatgaatatatatatatattatattatatatatatatatgtatatattctgAATGACACATACAACGaatgggattttttaaaatcctctaTGCAGAACTTTtcaagctcctttatattcCCAGATTTGTACATGTGGACTtccctcttcaattcagacaAAAGATTTTCAACAGCGCTCAAATCTGGACACTTAGATGTCCAATGCAATCCACTAATTTTGTGTTTCTGCAACCATTTGGATGTATATTTAGGCTCATGATCTTGCTGAAAGATCCATCTATGGCCAAGTCAACAACCAGGTTTTGCACTTTAATATCCTAGTGTTTAGTGAGATTCATGAATCTATCAATCTTCATAAGAACATATTTTACTGTGGGCTTGTTTTCACACTCCTGGATTCTGCACTGGAAGCATAAGTTCCATAAAAAATGTATGCATTATAAACTTACAAACTTATTTTTTGAAAGTATGGCATTGCATGTTTGCTTAGTAAATCTTGctttttgaaaaataacatgTACAACCTCATTCACAAAAACAGACTTTGTttgcattagttttaaatattcattaggGTTGTCAAAAATTATGCCACATTTTTAGagatattatcattatttttttgttagagAAAAGGTAAGTAGTTTCTCCAGTTCATTCtgaattgtgtgtaatgtttattttataaagtaatATATGCCCATGCTCATGAAGCTGCCAACAATTCTGGAGTTAGAGTTAGTAAAGTAGTTAGAGATAATAGCATAACTGACAGTCATAACCtttacatacacaaatataaaacagaacatttttagTCAGTTTAAACTGATAAAGCATCTGcttgtatttttcacttgagagtgtgtgtagatacATGCAtactttcaaacacacacatgtactttCACACACAGGATGTCTCTGTCTCCATGTGCTATCTACTGGCAAACAGGGCTTTTATGTGGGAAAGCAGATGCCACAGCACTCCATGCAGATCTCGAGACAGTCGGAGGACTCGCAGCAGGCGTCCATAATGCCGCAGTCCATGTCGCAGGGGCAGTTGCAGTCGTCTCCCAGGTCGTCtgcgcagcagcagcagcagcaagccTCTGATGTACAGGCGCCACATGATGCCTGAGCCACCACCATGTTGCACAGGGTGAGGAACTCACAGAACAGGCAGGCTAGGATGCAGTGCACACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337489 lncRNA downstream 11971 18918456 ~ 18922897 (-) False LOC117599567
XR_004579967.1 lncRNA downstream 11998 18918396 ~ 18922870 (-) True LOC117599567
TU337464 lncRNA downstream 72716 18861845 ~ 18862152 (-) True G284882
TU337448 lncRNA downstream 103729 18830925 ~ 18831139 (-) True G284866
TU337444 lncRNA downstream 111668 18819942 ~ 18823200 (-) True G284862
TU337873 lncRNA upstream 350496 19288591 ~ 19290806 (-) True G285245
TU337891 lncRNA upstream 418465 19356560 ~ 19357907 (-) False LOC113532309
XR_003403326.2 lncRNA upstream 418879 19356974 ~ 19385863 (-) True LOC113532309
XR_003403325.2 lncRNA upstream 431232 19369327 ~ 19385863 (-) False LOC113532309
TU337928 lncRNA upstream 466984 19405079 ~ 19405317 (-) True G285287
XM_026922985.2 mRNA downstream 146971 18781747 ~ 18787897 (-) True ppp1r3aa
XM_026923414.2 mRNA downstream 187035 18747031 ~ 18747833 (-) True LOC113532190
XM_026922762.2 mRNA downstream 190706 18739775 ~ 18744162 (-) True gpr85
XM_034313317.1 mRNA downstream 259423 18665209 ~ 18675445 (-) False tmem168a
XM_026922669.2 mRNA upstream 157297 19095392 ~ 19107426 (-) False tfec
XM_034313021.1 mRNA upstream 157301 19095396 ~ 19103077 (-) False tfec
XM_034313020.1 mRNA upstream 157301 19095396 ~ 19103077 (-) True tfec
XM_026922670.2 mRNA upstream 157302 19095397 ~ 19105351 (-) False tfec
XM_026923199.2 mRNA upstream 202350 19140445 ~ 19161281 (-) True lta4h
trnae-cuc_38 other downstream 722475 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 746870 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 842324 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 844246 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 851014 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 1374972 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1484306 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2522731 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2522731 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2522732 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000335_00332659_00338564.mRNA True 936 mRNA 0.48 3 CI01000335 332277 ~ 338564 (-)