Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU337891 |
| length | 1323 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | LOC113532309 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 19356560 ~ 19385863 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU337873 | lncRNA | downstream | 65754 | 19288591 ~ 19290806 (-) | True | G285245 |
| TU337468 | lncRNA | downstream | 418465 | 18868057 ~ 18938095 (-) | False | G284885 |
| TU337467 | lncRNA | downstream | 418465 | 18934868 ~ 18938095 (-) | True | G284885 |
| TU337489 | lncRNA | downstream | 433663 | 18918456 ~ 18922897 (-) | False | LOC117599567 |
| XR_004579967.1 | lncRNA | downstream | 433690 | 18918396 ~ 18922870 (-) | True | LOC117599567 |
| XR_003403325.2 | lncRNA | upstream | 11420 | 19369327 ~ 19385863 (-) | False | LOC113532309 |
| TU337928 | lncRNA | upstream | 47172 | 19405079 ~ 19405317 (-) | True | G285287 |
| TU337929 | lncRNA | upstream | 47996 | 19405903 ~ 19406128 (-) | True | G285288 |
| TU337930 | lncRNA | upstream | 50363 | 19408270 ~ 19408805 (-) | True | G285289 |
| XR_004579862.1 | lncRNA | upstream | 71263 | 19429170 ~ 19430559 (-) | True | LOC117599445 |
| XM_026923246.2 | mRNA | downstream | 1422 | 19335661 ~ 19355138 (-) | False | pparaa |
| XM_034313316.1 | mRNA | downstream | 1562 | 19335661 ~ 19354998 (-) | False | pparaa |
| XM_026923247.2 | mRNA | downstream | 4112 | 19335661 ~ 19352448 (-) | False | pparaa |
| XM_026923248.2 | mRNA | downstream | 4259 | 19335661 ~ 19352301 (-) | False | pparaa |
| XM_034313315.1 | mRNA | downstream | 5900 | 19335661 ~ 19350660 (-) | False | pparaa |
| XM_026923040.2 | mRNA | upstream | 53923 | 19411830 ~ 19428263 (-) | True | atxn10 |
| XM_026923748.2 | mRNA | upstream | 74979 | 19432886 ~ 19444451 (-) | True | def6c |
| XM_026923712.2 | mRNA | upstream | 158447 | 19516354 ~ 19519608 (-) | False | cbll1 |
| XM_026923714.2 | mRNA | upstream | 158447 | 19516354 ~ 19519506 (-) | False | cbll1 |
| XM_034313359.1 | mRNA | upstream | 158447 | 19516354 ~ 19519506 (-) | False | cbll1 |
| trnae-cuc_38 | other | downstream | 1144167 | 18212322 ~ 18212393 (-) | True | trnae-cuc_38 |
| XR_003403330.2 | other | downstream | 1168562 | 18156824 ~ 18187998 (-) | True | cald1a |
| trnaa-ugc_14 | other | downstream | 1264016 | 18092473 ~ 18092544 (-) | False | trnaa-ugc_14 |
| trnaa-ugc_13 | other | downstream | 1265938 | 18090551 ~ 18090622 (-) | True | trnaa-ugc_13 |
| trnaa-ugc_11 | other | downstream | 1272706 | 18083783 ~ 18083854 (-) | True | trnaa-ugc_11 |
| TU338301 | other | upstream | 955160 | 20313067 ~ 20320050 (-) | True | G285607 |
| trnaa-ugc_16 | other | upstream | 1064494 | 20422401 ~ 20422472 (-) | True | trnaa-ugc_16 |
| XR_004579970.1 | other | upstream | 2102919 | 21460826 ~ 21471100 (-) | False | LOC113544587 |
| XR_004579971.1 | other | upstream | 2102919 | 21460826 ~ 21471056 (-) | True | LOC113544587 |
| XR_003404518.2 | other | upstream | 2102920 | 21460827 ~ 21471100 (-) | False | LOC113544587 |
