RNA id: XR_003403326.2


Basic Information

Item Value
RNA id XR_003403326.2
length 2416
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id LOC113532309
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19356560 ~ 19385863 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatttggctttttttttttaactatggAACAAATCAGCATGACAGACACACAACACTGAAACTTTCAGAGACTTAATTTAGCACAAACTTCCTGGAGTACTACCTCACACTGAAAGTCAGCTTTTTATTATGAGGAGagACATGCTATCAGGCGGCTATGGGCTGCTACACGTCCCTGTTCGCCTTATTCTCGGCTCATTCACGTGTTTTCGGTGCCACGGCGGACTGAAGGAGCCCGTGAGTGCGCGAGCACCGCTGCATCTCCCCGAGCAGCTCGTGCAGCAGCAGTGTGCAGCAGTGTGCAATGCCGGACATGCCTTAGAATTTCGGGAAATAGCTTGTCTAGCTGTACACAGGCTCTTGTGTAACGGGTTGCTGTGAATCCCACTCCACTTCGCTTCACCTTAGTTGAACTTGGGTGATCTAGTTCAGCAGGCGCGTGAACGCTGTCAGGCCGGTGTGTCGGGTGCCGcgaggaggaaaagaagaacaacaacaacaacacgaaaaagaagaagaagaagaaaagctgtcattataataataataataataataatcataataataattatgattattatgattacgCCAGAATCCTTAAAAGGGACAATCTCTcgacgtatatatatatatatatgtcgtaggcatatttttctttctttcttttttagctCCTAACACCGAGGGACGCCCCGGCTCGCGCTGCTTTTTCGCTTCGCTCGCGCTCGCGCTCGTCTCCGTCGTTGCCGAGGAGCTCGCGCTCAACAAAAGTAACCGGGACGACTGGAATTCGCCATGGAGAAGAATGACAGCTCTCCACCGCCCGGACAGCGCGAGCTCaccgtctcttcttctcttctcttctcttctctttgctcttaaacttgaacttgaacttgagctCCACCACCGGCCCCGTCGCCGCCTAAACGTCGTCTCCGTGTCCgtgtAATGAGGAAGATTTGGTAGATGAGGTACTTATCCATGGCATCATGATACAGAGGCTGACCCTAGAGTTCACAGCTGTAATTGAGAAGTCTTGCAGACACGTGCTTGTGGGGCCCCAGGAGAGACCACCACCGCAGCGGAGCCGGGGAGCGaaagGCCTTCAGGACCAGTCTGTATAGCCTCAGTCTACCcacattttcctcttttgtGAGATGGccaagttaattttttttttacatagaacCACGTCCCATGGAACTCCTCATGAAACAGAGCTGGGTATTCAGGTGGTATTATTAATACACACTTcatgtctgcatgtgtgttctCAAGATATAGTGCCTAATAATCATCATTCATTACTCTGTACTGAATTGCGGGAATGAATTGTTTGTGAGCTGAGGTACGGGAATCGTCAGTCCTGTTGCAGAGAGACACTGTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTTGAGCCCTTGCTGTCAGAtaactatacaacttactgtcTTTCCTGAAGTGGCCGTAATGTCATCGATCAAGAGCTGCACGACCAGTGAAGCACATCAACACAGATGCTTTTAAGGATTTACTAGACTCCATGTGATAGTAGCTAAAGACTGCTACACAGAAGAGTgtaaaagtttgtgcccccatCGATTCCGggtggaaaaaagggaaaatgatGCATAGAAATGTTGGGTGTATTATGAAACAAGACAAGAATCTGAAACGTAAGGCAAAAtgagcaatatatatatatatatatatatttgcccTGATCTTGACCTGATCtgaagaaggaaggaagcatAAAAGGAAAAGCATGGACATACAAGTTATTAGAAATAATTTACATGATATTCAGAAAGAGGGATGCAAACATTTGAACTTATATATTGACCATTTTCATTACATGTGATAATGAAGTAATCATTGTGAAACCTAACACATAAAAAGTCTTGTTGCTATAAATCGAATGTCTtcattttgtcttcttttttcttcaagCAAAGGCAAACTTTTGTACTAAACtctacataaataaaagcattttggCCTCAATGAAACAATTGAATAATGAGAAACTGAGTTTGCCTTCAATTTAGTCTGATTTTTGTTGACATTCTGAGAAAGACATGAGCCGAGCAGCTCTTCTTTGAGTTTCACTGATGTTTGTTCATCGGTGAGCCCAAATGAGATGTCTGTGCCCTGGAGAAACCTTTCAGTGATGTTCGTACAGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGTCGTGATTTTGCCCCATCAGGAGATAACTATACAACCTACTGCCTTCCCTGAAGGGCAGCAATACGTCACTGGATACCAACGACAAGATGGCGCCAAGCtagtggaggtttttttttcctagtcggTCTGTCAAATTTTGCAACGTGACCTGAAGAgcaataataaagataaatatataactaCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337873 lncRNA downstream 66168 19288591 ~ 19290806 (-) True G285245
TU337468 lncRNA downstream 418879 18868057 ~ 18938095 (-) False G284885
TU337928 lncRNA upstream 19216 19405079 ~ 19405317 (-) True G285287
TU337929 lncRNA upstream 20040 19405903 ~ 19406128 (-) True G285288
TU337930 lncRNA upstream 22407 19408270 ~ 19408805 (-) True G285289
XR_004579862.1 lncRNA upstream 43307 19429170 ~ 19430559 (-) True LOC117599445
TU337984 lncRNA upstream 174549 19560412 ~ 19560619 (-) True G285331
XM_026923246.2 mRNA downstream 1836 19335661 ~ 19355138 (-) False pparaa
XM_034313316.1 mRNA downstream 1976 19335661 ~ 19354998 (-) False pparaa
XM_026923247.2 mRNA downstream 4526 19335661 ~ 19352448 (-) False pparaa
XM_026923248.2 mRNA downstream 4673 19335661 ~ 19352301 (-) False pparaa
XM_034313315.1 mRNA downstream 6314 19335661 ~ 19350660 (-) False pparaa
XM_026923040.2 mRNA upstream 25967 19411830 ~ 19428263 (-) True atxn10
XM_026923748.2 mRNA upstream 47023 19432886 ~ 19444451 (-) True def6c
XM_026923712.2 mRNA upstream 130491 19516354 ~ 19519608 (-) False cbll1
XM_026923714.2 mRNA upstream 130491 19516354 ~ 19519506 (-) False cbll1
XM_034313359.1 mRNA upstream 130491 19516354 ~ 19519506 (-) False cbll1
trnae-cuc_38 other downstream 1144581 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 1168976 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1264430 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1266352 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1273120 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 927204 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1036538 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2074963 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2074963 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2074964 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile