Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU337929 |
| length | 226 |
| lncRNA type | inter_gene |
| GC content | 0.58 |
| exon number | 1 |
| gene id | G285288 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 19405903 ~ 19406128 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU337928 | lncRNA | downstream | 586 | 19405079 ~ 19405317 (-) | True | G285287 |
| XR_003403326.2 | lncRNA | downstream | 20040 | 19356974 ~ 19385863 (-) | True | LOC113532309 |
| XR_003403325.2 | lncRNA | downstream | 20040 | 19369327 ~ 19385863 (-) | False | LOC113532309 |
| TU337891 | lncRNA | downstream | 47996 | 19356560 ~ 19357907 (-) | False | LOC113532309 |
| TU337873 | lncRNA | downstream | 115097 | 19288591 ~ 19290806 (-) | True | G285245 |
| TU337930 | lncRNA | upstream | 2142 | 19408270 ~ 19408805 (-) | True | G285289 |
| XR_004579862.1 | lncRNA | upstream | 23042 | 19429170 ~ 19430559 (-) | True | LOC117599445 |
| TU337984 | lncRNA | upstream | 154284 | 19560412 ~ 19560619 (-) | True | G285331 |
| XR_003403329.2 | lncRNA | upstream | 174726 | 19580854 ~ 19588244 (-) | True | LOC113532316 |
| XR_004579877.1 | lncRNA | upstream | 174726 | 19580854 ~ 19582953 (-) | False | LOC113532316 |
| XM_026923246.2 | mRNA | downstream | 50765 | 19335661 ~ 19355138 (-) | False | pparaa |
| XM_034313316.1 | mRNA | downstream | 50905 | 19335661 ~ 19354998 (-) | False | pparaa |
| XM_026923247.2 | mRNA | downstream | 53455 | 19335661 ~ 19352448 (-) | False | pparaa |
| XM_026923248.2 | mRNA | downstream | 53602 | 19335661 ~ 19352301 (-) | False | pparaa |
| XM_034313315.1 | mRNA | downstream | 55243 | 19335661 ~ 19350660 (-) | False | pparaa |
| XM_026923040.2 | mRNA | upstream | 5702 | 19411830 ~ 19428263 (-) | True | atxn10 |
| XM_026923748.2 | mRNA | upstream | 26758 | 19432886 ~ 19444451 (-) | True | def6c |
| XM_026923712.2 | mRNA | upstream | 110226 | 19516354 ~ 19519608 (-) | False | cbll1 |
| XM_026923714.2 | mRNA | upstream | 110226 | 19516354 ~ 19519506 (-) | False | cbll1 |
| XM_034313359.1 | mRNA | upstream | 110226 | 19516354 ~ 19519506 (-) | False | cbll1 |
| trnae-cuc_38 | other | downstream | 1193510 | 18212322 ~ 18212393 (-) | True | trnae-cuc_38 |
| XR_003403330.2 | other | downstream | 1217905 | 18156824 ~ 18187998 (-) | True | cald1a |
| trnaa-ugc_14 | other | downstream | 1313359 | 18092473 ~ 18092544 (-) | False | trnaa-ugc_14 |
| trnaa-ugc_13 | other | downstream | 1315281 | 18090551 ~ 18090622 (-) | True | trnaa-ugc_13 |
| trnaa-ugc_11 | other | downstream | 1322049 | 18083783 ~ 18083854 (-) | True | trnaa-ugc_11 |
| TU338301 | other | upstream | 906939 | 20313067 ~ 20320050 (-) | True | G285607 |
| trnaa-ugc_16 | other | upstream | 1016273 | 20422401 ~ 20422472 (-) | True | trnaa-ugc_16 |
| XR_004579970.1 | other | upstream | 2054698 | 21460826 ~ 21471100 (-) | False | LOC113544587 |
| XR_004579971.1 | other | upstream | 2054698 | 21460826 ~ 21471056 (-) | True | LOC113544587 |
| XR_003404518.2 | other | upstream | 2054699 | 21460827 ~ 21471100 (-) | False | LOC113544587 |
