RNA id: TU338032


Basic Information

Item Value
RNA id TU338032
length 5672
lncRNA type intronic
GC content 0.40
exon number 2
gene id G285362
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19710897 ~ 19719135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAAATgttctcttctgtctcttcGCTCTTCCTCCTCGCTCTTCCTCCTCACTCTCACACCCCAGGGTTCTACATTGACCTATTAAAAAGATCGACCAGTGGTTGTCTTGAGATCGACGTAATGAGCACCCATGGTGTAGGCTTTAGCAAACCTTCAaatagggctgcacaatatatcgaaattatcaaaatatcacaaatgtaaatatcacgATATGCATATCACAAGGGCTtgtgataactgaatgatttaaATTCTTcgaaaagtttaaaaagttaaCGTTTTGGGTGACGCAGagagcagagaatgctttcttttcctcaaaagaacacgAAACATGTATgctggttatgtcattttcattttttaaatgaataaatatataattttaattgattttacacacgtATAGCATTATTGTACTGAGTTATCGCGTATCGtgttttttttcaatatcaTGCAGCCTTATCTTCAAAGtaacaaaaaattaatacatCAATTATCAAAATATACACTAAGTGCAATACGCAGGTGTACCTATTCTTTCACACCTTGCACAAAatttaagaagaaaaattaGAATTGATCTGCGGTTTGGACTGACTGAAAGTTATGCGATAATGACGCCCTTCCCCAAATCTCGAGTATTTAAACCACATGTGAAAACGCCCTTAATGTAGCTCTCAGTGAGCACAGTGCTCGTGCACAGCAAGCCTATCCATACAAACTCTCTGCTCTTTAGagtctgttcttttcttttctgtgcaGTTTTGATATAACtaatctttttccttttctttgagTCAGCATAATTTTGAGACAAGGGAGCTGCCTGTTGATCGATGGGATGTCACTGTGTTTGTGGTTTCCTCTGGGCGTATAGAGTGTAAAAGAGTACATGCGAACTCATCGTGCTCCCAGCTGTGTTACAGAGATGTCATATGACACTGACGCAGACATCTCAGAGAGGGCGTTAGTTGATGATTATTAGGCAGGGCCGTGTGGTTTCCGTTTCTGCAAGGTGGCCTAAGGCATGGCGAGTGCCTCAGGCCCTAATCTCTACCAGAACCAGCTTCCTGTCTCCTTGTGTCAGAAGTCAGACGAGGCCCCTCTACAGGCCATGCAGTCGGTTTTCTCCAGGTTGGACGTAGCCTCAATATCCTGCCAAGTTTATTGAGAATATTATGAtattggacttttttttatgttttattttccagtACAACTTCAATATATCCATCAAGGACAGGTACCATtcagttttctgacatttttcatttaaaaaataaatgaaaatatgacaTTCTGTAGAAGAATACAGATCAATCAAAatgaagtattattattatttttagatttttttttcttgtaactttaattttaagaaaaatctcAAAAGAAAGCCAATCTGTCTTAACTTTACagtgaaacagagaaaaagaacatCCAGATTAACCTTAATGTAAGTCTTAAGCGCAAACTGTAGTGTCTTCACATTGGAAATGAGCAAATATCTTTACTCACCACATAGTAGTTCTTAATAATATGTTCATAATCATCCAGAATCTTATCTGATAATCTGTAGAAACATTGTAGACTGTCATAACTGACTCAGCATTGCTCAGAGTCATGATCCAGTGGCAGCAGGTTTCCTGTTCGGGGTATTAGTTTTTCTTATTCATAGTTGCCCAGCTGGCAAGTAGATTCAAcagccagaaaaagaaaaaaaaatcctactccTAAACTTAATGTGTTATACACCATAATGTGTGCCGCTGTAATGCACACATTGGGATGACTGTAGAGCGATTTTTAGTAGGaggattaattagcatgcacgAATTGTATGCGGAAACTCTGATAAACCTGAGCAAGATAAAGTCCAGTGCAAACCTGTCACGTACTACAACTCTATACACtgctataaataaatcaccTTGTGGTTAAACATGTCAGGGGAAAATGAAGATGCTAGCTAGTCTCAGATACCTTTTACACGCAATTTGTGGACGGAATCTCGCCAAcaatttgttttggtttttttttttgttttttttcctgcatcaCACTTATATTTGGTGTTTCATCAAGGCTACATGATCAAGATAGCGAATCAAAAAATGTTTCTGCATATTTTTCCAGCATGGTACGTCAAGGACAGCCTTCTCAAACTACGATTTCTTGCATGCATATTCATCAAGACCATTCAGAGCAAACCATCCTGTGCCTTGTACAGCAAGGGACTATGTAAATGTAAGTGCGTAGCAGCCACCCAGAGGAACATGGTGCATGTTTTACATGTTGAGCCGGAAGAAACTCAGTTACAGCAATCTAGCTCAGTAGTGATCATATTTCTTGAGTTGCTCATTAGTAAATATAGTGCTTGTGCAGTGTGAGTTGTTTGAGACTGTTATGTAGATGAGTAGCATCTTCTCAACCAGGAGTATAACCTCTTTAATACTGGTGAATGGATTATTCTCTTAGTCTCTTCTCTTTTGCATGTTGTTATTGTCCAAAGATGATCTAAGGCCAGACAATCTCAGGGCTAATGCTGTTCCCCCACTGTTAAACACttggaaaaaatgttttgagCATGTCGTCATTCAGACTTCCTCTCGCCAAAGCGTGGCCAACACCCATGTTCTCATTCATGGAAGACCCTCAAGACAGTCCTATAgtaccatttttctttttgctgttcATGGATTAATAACtgggaaaaaaggaaatcaGAGTGGATAACTACATTCCACCAGCACACTATCATCCTTTCTGACACAAGTGTTAGCAggcctaaaaaaacaaaaccgtAGCAGGTATTGTTGCTCTCCTCTTCAGTGAATGTGTATCTTAGTACATAGGAGGATATTTATCACTCCACACTCGAGCAAGGCGGAGAAGCAGAGCTGAGATTTAAATCTCCAGTGTGCAAAAGTTTCTCAGTTCAGTGCGGACAGTGATTGGGGAGAAGTGTTTAGGTTCTGAGTTGAATATTGGACTTGTGCTGCTTGTCTCATGGGCTTctttatgtgcattttttttttttatactgtgtgGGAGAACTGCAACTGAGCTATTACACTCACACTGTTATAGATAAGTGTAGGCACTGTACAAACAAGGCTTCACCTTTTCTGAAGTTGAAATATTCCAAAACGAgtcattaaaatggaaaatcttTAGCTGTTGATTGGTGTAAACATTAATCCATGTGGGTGGACTGTCGGGGCCAAGTGTGCAGCGACTTTCCACAGGGAATATGTATTTAAGGATACAAATGACTTTAAATGACTTTAGATAAGTGAAGGTCTGTGTTCTGAAGTGAACCTAAACGGCTCCTGTTCAGTTGTATGATGGGAAATAATGTTGTGCCTACGCTAGCTGCTTTAACAGGGTCTCAGAGTCCAGGCCACATGTGGTTTTGGTATGGGTGATGAAGTCAGGCCCCAGAGTGTCTGCAGAAAGGAAAATTTAGCTGCCTGCTGTCTGGGGAATTCACAGGTTTGCTGTGACATGGGCTGACCCTTACTCATTTGTCATTACCAGTGTCCCAAATGCGACACAGTGAATCATTCAAAATCTGGTCCATTGTTTTAAGGTGGCCTTATTCTCTGTTCAGGATGCATAAAGAAATCATCGTGCTGATTTTCTGCTTGCTGTAATAGTTTATTCATCCCTGAAAGCTATACTTCGTCTTACATTTATAATTAGAGAATGACAAATTGAGGTGTGGTGAACTGTGACCCCAGGCCAGCATGCTTCCTTAGCCCTAATGTGACACTATTGTTGATGTAGAATCCTGGGCTGTAACGGTTCATCATTCCTGGTCTTTAATCATGACCTTTTGTAATGTCACACACATTCTTTGGCTAgtatacattttcaaaaactgaaaacttGGCTTTTTCACACCATTCGATATGCGTTTGCACAAATTGGCTAGTTACAAATGTTCTCATTATCTGACATTGAAACTGCCTTGCCATGTGTGTTGgtattaatatgaataataccaaattatcattatcataataataataatgccaaaGTGATCATGTATGTGATCAGCTTATGAGCTGTCCTAGTGTCTTAGTATAGAACGTTGCTCACAAACAATTAATTGCTGGGGCTCACGTCCAATTATTATAGCCTGAGGTCTTATTGTTGGAAAAAATTCTTAAGGAATGCTGCTTTCCCTATcgtttatttcttacataataaGTGGCAGGCTTGTCATTATCTAAGCTCTTTTTCTGCTGACTGCCATTTGTGCTTCCTGGTCCAGTGTTTGTTAGTGTTATCATTGTTGGCCTAACTTGTGTATTACTTGATACGTTATGCCTgtgcatttttcttcatttacttGGAACTAGACAAACCCTGTCTCTATGGACATGCCAAATGGTTATGGGGTTAGGAGCATCATATCTCATTTGTGGCATGAGACTGAGCCGCTGGGTATTGAGAGTCTCCTTGGCCCTTCTTACATGGGCATTATAAAGTGTCACCATTGCaaaacttgtttatttatttatttatttcctggaGAAATGTTATGATATCATAGTAGAAGATGCTAGATGCATTTTGGATGCAACTACTGCAGGTGGGTAATCATAAAGCATGtacaaaggagaaaaaaagaagttctAATGATAagtgatgctgatgatgatgctggTAGAGAGAGTGCATTGTGCAAAGATCAGCTTTAAACACTCGTTTAATAGGTAGAGCATGAAGAGGAGCTAAGACAGGCTGGCTGCATGGAGAGCACTTGATCTTTAGTCAGTGATTAAGGCATAACTTCAAACCCCCTTCCTGCTGTGAGGTCACTTCCTTTACTttccaaccttttttttttttttttttttaacagcttaCTGATCAGCTTTCTCCAATCCTGTTGCTCGTCCTGTTGCCTAGTGACCATGATCGTCTTGCATATTTATTGCAACCCCACCTGGCCTGAGGCAGTGATGGTTTAACAGCTGGCCCTCCCCATTCCTCATTAAAGAGGCGTTCTGCGACTCTGGCACTGCGAACGAGAGGGTCAATAGCACCGGAAAACACCAAGGGGGGTCTTTAAGACCGTGTGGGACTTGGCCTCTGTTGACTTCCTAGCAGCAGGGTCCGCTCTCATCTCCCCGTGCCTAAAGCTTCCATCCTGGTGAGCATCCGCTTTTCTAATTGCTGTCTGGGATCCAGCAAGGACTGCGGGAATAGTGGCTGCTGGATGGAAATGGAAGGGATGATAAAAGTGTAATGGGCTCAGCTGTTGGCCAGTGTGAGAGTGGCAGGGCACTATTGATTGGGAATCAGGGCCGCCGATGGCGTGTCTCGGATTTGTCGGTTGGCTAGAGCAAGCACAGATTGCTAAATGCTATATGGATCCCTCTTTATTTTAGtcagagaagaagaagcagcagcctttatttgtctcacatacattacagcacagtgaaatagTTTTTCGCATATCCCAGTTGTTAGGAatctggggtcagagcgcagggtcagccacgATACGGCTcccctggagcagatagggttaagCTGCttggtgctggggcttgaaccccgaccttctgatcagtaagcCAGAGCCTAAactgttgagccaccactgcaccAATATAGGTCATCCCTGCAACAGTTACATATTATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338029 lncRNA downstream 31622 19678500 ~ 19679275 (-) False rap1b
TU338031 lncRNA downstream 33302 19676840 ~ 19677595 (-) True G285361
XR_003403329.2 lncRNA downstream 122653 19580854 ~ 19588244 (-) True LOC113532316
XR_004579877.1 lncRNA downstream 127944 19580854 ~ 19582953 (-) False LOC113532316
TU337984 lncRNA downstream 150278 19560412 ~ 19560619 (-) True G285331
TU338109 lncRNA upstream 197474 19916609 ~ 19920334 (-) True G285437
TU338095 lncRNA upstream 234478 19953613 ~ 19960579 (-) True G285425
TU338098 lncRNA upstream 243824 19962959 ~ 19967411 (-) True G285428
TU338096 lncRNA upstream 305608 20024743 ~ 20026895 (-) True G285426
TU338286 lncRNA upstream 559391 20278526 ~ 20291863 (-) True G285593
XM_026922602.2 mRNA downstream 34514 19671525 ~ 19676383 (-) True mcat
XM_034313224.1 mRNA downstream 45948 19633422 ~ 19664949 (-) True cfap54
XM_026923715.2 mRNA downstream 191397 19516354 ~ 19519500 (-) False cbll1
XM_034313287.1 mRNA upstream 140366 19859501 ~ 19868173 (-) True dyrk2
XM_034313288.1 mRNA upstream 140366 19859501 ~ 19867749 (-) False dyrk2
XM_026922683.2 mRNA upstream 172777 19891912 ~ 19896958 (-) False si:dkey-39a18.1
XM_026922682.2 mRNA upstream 172777 19891912 ~ 19896110 (-) True si:dkey-39a18.1
XM_026922802.2 mRNA upstream 179125 19898260 ~ 19922472 (-) True cand1
trnae-cuc_38 other downstream 1498504 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 1522899 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1618353 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1620275 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1627043 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 593932 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 703266 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 1741691 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 1741691 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 1741692 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile