RNA id: TU338095


Basic Information

Item Value
RNA id TU338095
length 6937
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G285425
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19953613 ~ 19960579 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTTACCTAAGCTATCTTCCTGCAAACACCATGTTGTGTTAAGAGCCAGTGTAACAAACACTATGAttaaaacagtcagtctgcctaaaatGTCCAAAACGGTGCTAGCCacgtgtgatttcctcacacagtgaacgTCAGGTTGTTGAATAGCTACTCGACACAGCATAATGTACATAAGCTTAATTAACTCGTTTTGTAATCAAATatcggctgtcaaaatgtctgcagtGCTCCTGTGCCACAGTCAgaatcaaatatttaaaagcacTTTTAACTTTTGGAAagaaccagactttaaaatgctaaaaccaATGTCACATCAGGAAAGCCAGTAGTTTCCAGAACGATATATAGGtcaatttcaccatgtgaaggggtttcccaggccaccacaccctcatgttgtgtaaaaatgtctttattagATATAGATGCCATCATTCAAGATCTTTTCTCTTGTTAAGATggcattattatttacacacacacagaaagaagaCGACATAGTAGAAAACGTATCCAACAAACTGGATGCATGGTATgatctgaaagaaagaaaaaaaaatcaatgagaCAGATCCAGTGAAAAAAACAACCTGCATctccactaaaaaaaaaaatggctgcgATTCCTTTATCCACGTAAATAATCCCCGACTGATAACTGTGTTAATTCACATTTGCGGTTTTATGAAATTGTAATAGTATCACCCTGGGTAATTATGTTTGGCATGCTAAGTGCTTCATGAGCATGGTGTGTGGACAGAAGGAGCGCTCACCCTCTCTCATCTAGAGATAGGGAGCAAAAAATCAATAGTTGCTTGAGCTGACAGTTGTGACAGTACAAAAGGAATTTGACATTGAAGAGCGTAAGAGAAGATGGAGGACTCCCTTAGTGTCTTCGCAGATCAGTCCAAAGACACGGTCATGTATGCGAAATGAAACGGACGTGTCAGTTAACGCAAAATGAACTGGCCTATTTCCTGCGTCTTTAAAATGACAGAATGTACAGCTGCATTTCTGCTCAACTGATGCTGATCTTTTCAGAGTCTTGACTCACAGAACAGGGTTAATTTAGATAACGGTTTGTGAGAATGCACCAATAAAACCCTAGTCCCAAGTTCAATTAGTTTGCCATACAGTTGCAGAAACAATCTCAATCGCAATGTCACCTTGCCTTTTCTTTGCCAGTTCCTCCCCTTGATGAGGTCGTATGAAGATAAACAGCTTACCCTGGGGCGAAATATGCTGATTGTGGTATTGTCATTCGCCGTGTCCTTTAGCTCACTCACAATCACTGCCGTGAAAAAACCTCGTCTTATCTTTACTGGCTGATCTCGTCAGCTCAAAATCTGTATATGCACAAaaactacaataaaaaaaaaaataacaaccaGTTCCAACTCGCAAAATGGAAACGGACATTGCTGCATTCAAAATCAGTGAAGCTATTCACAGGAAATACATTGTGATTTTGTATCTGAGTACAGAACATGACAGACGAGCATTTATCTCAATCAGACCGCATTCATTCTGCAGATTATTTAGAGCTATTGAGCCTTGCACTGCTCAGTTTATGTATAAATCCAGCAAAGGGTTTGCCTCGTGATTGCTAGATGTCCTCACTGATGTACTCTACTGCAATTATCAGCCCTAATTAATGACCGAGCGAGAAAGCTTCAGCATGGCAGTGATATCTGCTCTCCACATACTGATCGAGCTGCGGTCTCTTCCCGAGGCTCATTACTTTAAAAACAGACTTTCGTTCGTGTTACGAGCAGAAGACTGTGGCATTCATCTCCAACgtcatcataaatcataaataatggATCAATAGAAGGTTCCAATTAGGACGGCTAATCTTGTCTTCGCGTTATTATCGCGAGGCTGAGGTCTTCCAGCTAGACGTGGAAGGTGTTCGTTTATAGGGTGTTTAACTAGCAAGGTGATTAGACTTGTTCTAACTCAAACGTGATCATAAACATATAGGCAATgtgataaaaatattaaatcgtGGTACTTGGAGACATGAAATCTATTGTGTTATTTAGGCTAAATGAGGTTTTGCTGGCAAGTCAAATCAAGGTGCCacatttaaaaagcatatttttaaaaaacaggtgATATCCAATACGATATCCATAAGAtgataaaatacacaataattttttttacactcagtAAATCCATATACTCTTAAAAAGATAATCCTGATAAGCACTCGGGATTATTTGGAGTAGAAGATCGTTTGATAAGCTTCCTACCAAAGGTCCTGTTTTGTCGTAAATGCTTCTCGAAAACCAAAAGCTGAAGGTTTGTGTTGGGATTTTCTTCAGAACCATCTTACTCATAGACGCCAAAGCAGAATATAGTGGAAAGCTATGTAtagtgccctccagaattattggcacccttcataaaaatgagcaaactgaatatttaaaaagatttttttagctTGAACATACAGGGACATTTTATTAGTACAGGTTTATTTCAACGTGCTGAACACTTCTGAAAGTAGCGCAATGTTTTCTGCAAAACACTGGATTCCAAATTTTCAGTTAATAATTTGTGACTTCTGCCCtgaagagaataacagcactgtaaTATCTACCAAGGTTGGCGAACACTGTAAGCTGTTAATATTCTTAGCTTTGCGCAGGTGGATTTTCCTCTTTCATTCAGACCATGGTTTCAGACTGACATGGtcattgcaaaaaaaacacacattgtgtgtttgtttaactgtttctgtgttgattttgtAGTTTATTCAGCTTGTTGAAAGCTCAATCTATGGCCAAGTCCTaacttcctggcagaggcaaccaggtttggGGCATGAAATGTCCTGGTACGTTACAGAATTCATGATACGccaaacatgctgatggtgTGCATGATCAAAAGGTatgattttggtctcatctggcCATGACACACAATGCCAGATTTAGTTATAGTGATGTTGGGTGAAGTCCAGGTGAGATGGGTGAGATGCTCTCAGGAAAGGCTTCTTTCTTGCAATGCTTCCAATAACTTTTTGATATAAACGTgtaaaactttgtttatttttgtaaaactgaTAAAATTGATCTTTGGTCTCTTTTAATTGTGCTTAATGGTATTTTAAAtgcttatgtatttttatatccattacctgatttgtgcaggCCAACAACTATTTATCTCCTTTGTATTGAAAGTTCTTTGGTCTTGTCCATGGTAATGAATAACAAatggattttacatgtgtgcaacttCCTATTTTTACTCCTggagaaacaagaaaaatgttaaaGGCAACCACAGTTCAACTGAGagcaaataaaacacacttttttcaaGAATGACCATTTGTTTTGgaatttgaaattgaaatttatttaaaaggatGTCAGTAATTTCGAGGAAAAATAGATCCTCCTATTGCTTGAGTAGCCAATTTGAATAACTGTGTGCAATGTTTGTTTTATAGAACCATTAGTCCTAgatttatgaagggtgccaataattctggagggcaccGTATACACAGACCTGAAAAGCACTGACATTTTGtcttcattctttatttaaGCGTGAAGCGACTTCACGCAGCACATTTAGAGTAGCGGATGAGAGGCTATTTAGCGCGGTGTCACTGTGTcagctcatttaaaaataatcactgcTATTTTAGCATTCAAGAGTCAAAAACGTTCAACACCTACAACACCTAAACGGCATGAAGAACACTTTCAGAATCTATATTTAAGAGTTATGGATGAATGTGTATCACGAATACTATGAAGATAATGTATACTGTACCTGTTGATGGTGATCCCTTGAACAACCAGAGAATAAATGGTCTCAATTGTGCTGCTTGGTTTTCTGTTACTGGCCTAAGCACGTCAAGACAATAGGTCTTTTGACTGCATGATGTCCTGTGAATCCTAGGTAGTGTCCTTCAagccgtctctctctcactcacacacacacacacacacacacacatacacacggcACCAAAGTCCAAAACCCAGGGCAACAGTGCTAGCAATCTTTAAGTCAGGAAATGCACCACAGGCCTAACAGAGCAAAAGGTCATCACACGTATCCCAGATTCACGTTTGGACGCGTTCAGAAACACACCTCGCAAGCAAAGCATTCTGTTTCACGGGTGCTCAAGGTTATTTGTGCTTTCAGAGGCTCAGAAGACATTATGCTCAGACACAGCAGGGAGATGAACAGAGAGCGATGCTGACGATGACATCTCTCCAAGGAGAGGAGTCTAGCAATATCAACACAATATCTATCAACAAATACTGTGCACGGCCTAAAGCAATTACTTTCCTCACAGACTAAACaattacaacaacaaaaaaaacgaaCAGCTATCCGGTTCCTCAGTGACGTCTAGTTTTCCCCATGATGTATAAAGGTTCATGAGCTGAAACCCTGCCAAGATGTTTGCCCCCAGCAACATGAGCCTAGAATTCACTGGATCATGCTTGTGGATTCAGACTTGTATGTGCTTGCTGTAAACGTGAGTGAAATCCAAGACAAACAGAGAGCAGAGAAAAGagcagacaaaaataaaagcaatttcttgtgttttttttcctaaaagcaATCATTCAACCCAAGTTAATTCTCAAAAAGGAAACTGGAAAGATCTATAGTATTGCTGAATTTGCAGAGACCCGAGTAAGCAACCTtccaaaggaaataaaaaacgTCCACACAAGCAGGCAAACACAAATGACTTCACCTTGTAATGGCATTTTAGATTATggttattttccttttttgtcatttttttttttttactcaaagaAACTTTTGGGGATGATGCAAATGAGTCACCATTTTAAAGCCCGTCCTTCTTTCTCGCCACCATTTGATTAAGCAGAATTTGTCCTATAAGGAGtaataaaaaggaagaaaacatgaAGCTTAGAGTTTTGTTAAATCTCTGCTAGGAGAAGAGACGCGTCACTAGAGGGACAAAGAAATACAGCATGCATACTGTAATTCTCTCAGTGCTACTCAAAATCCATTGTTCGTTTAATCAGCTCTATTCAGGCTAACCTTACAGATGTGTCAACAACAGAACCAGAGGAAAGCTACTTGAATTGCTATTTGAAGTGAGCACTAAAGAAGCAATCATATTTAAACACTTAAAGTGTGTTTTTCCTACTACCTCACCATAAGGCTTTCAATGCAGTTGCACTCTCTcgatatttaatttctttccgCAAATTATGTTGCATTCTGttccttttcttttaataactgATTCAGTCATTATTGCTGCATTCAGCTACAGTGAGAGACCAGGTGAAAACAGTTGAATGGTAGACAAAACGCTATCCTGGGTCCCTGGGGCAAACAGATttcatgtctgggctattaGTTCTTTTGTATTTATAACAGGTTCAATaaccaggaaaagaaaaagaaaaaaaaaagtacttcttACTGACTTCCGCAAATGAAAGTTTTCGATACAGTAAGCAAACTGCATCTTTTgaaatcccaccacctgctgcactacatacATCGGCCAAAGTACAATCTAGTTGTTTGTTGAGCAATTTGTGGATGAATTAGCATGCACAGATGACGGGATCATCTTTTCTGAATCAGCTACACCAAGCGACCGAGCAAAATGAAGTGCAGAACAGCGTTGTTAAACAACTCACCTGCttctacacacagacacctcACAGGTAAACGTATCGAGAGAAAATTAAGATGCTAGCCCAGAgcttcccaaactttttgggcaaatgaccccaaattgacattatgaattttctgcaaccTCAAGCCttgacgaaaaaaaaaaaaatccagatttataatataggactaCTGGAATATTTGAACATTATATTAGGccattaatattcatatgtgTATGGTAAGTGACTAAAAAACCCAAAAGGATATTCCTTGCAATTTCTTACTAATCTAGTAGGAAGTGTGGTGTTGTTATAGGACATGTATATGGCCCGACCTGAGGCAGaggagcctggtttatacttggcGCGTGATTTTGTGTGCACACGCAGAAGCTGAGGCAAAAGCGACATTCACTAGATGGCATGTCAGAGACAAATTctccctgtccatcaggtttcctgGCACACTGACAGGCTCGGTCTCTCTTAAAACCTTCCGCTGTCGTTGTGATTGCTGTCATTAGTACTCAATAGtagtctagaatagtacataagcatgcaatttgagacacaacatTAGTTTGGAGGCAGATGGACAGggaaatttgacatttttttgctGATCTATGCTAGTGCAGTGTCAGGATTAAGGATTGAGACTGAAATAACATGGAgacttgtctgaatgtgactctcagtaacatttcaaaatatcagCACACAAGATCCGTCTTCAATTTTTCTAATAatcatttgtaaaattaatcaatgaaacaaaaaaggagaTCGTAAGTTCCTCTCGCAAACCCTACATGGGGTcatgacccctagtttgggaacccctgtgCTAGTCGGACTCAAAAACCTTTCACATATAATGCGAGGACAGAACACAACATCTCAGGCAAAATGTTGGCCAACGACTGGCTGACAATGTGCTACATTACAAGCTTTATTAGAATAGGGTCATGATCATACACTCATTCGTTATACTTTCATTTCAAGTCTCTATTGCGCACCTAGTTAACTAGCTCGCCATATGTTATTATACTGCGTTAGCTATTCTTACCTACAGCTTCacacacatcaatgattataagattttgtagatttttttttttgttaaacattttcttgaatccatttactgtttgaacTTAGATTATTTGAGCATCcaccctgtgaattagctgttactatataaatgatgacttattagaacaagtgcattaatataggCTACCTGTAATTGAAATTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338109 lncRNA downstream 33279 19916609 ~ 19920334 (-) True G285437
TU338032 lncRNA downstream 234478 19710897 ~ 19719135 (-) True G285362
TU338029 lncRNA downstream 274338 19678500 ~ 19679275 (-) False rap1b
TU338031 lncRNA downstream 276018 19676840 ~ 19677595 (-) True G285361
XR_003403329.2 lncRNA downstream 365369 19580854 ~ 19588244 (-) True LOC113532316
TU338098 lncRNA upstream 2380 19962959 ~ 19967411 (-) True G285428
TU338096 lncRNA upstream 64164 20024743 ~ 20026895 (-) True G285426
TU338286 lncRNA upstream 317947 20278526 ~ 20291863 (-) True G285593
XR_004579993.1 lncRNA upstream 346764 20307343 ~ 20312535 (-) True LOC117599590
TU338324 lncRNA upstream 429156 20389735 ~ 20390426 (-) True G285630
XM_026922802.2 mRNA downstream 31141 19898260 ~ 19922472 (-) True cand1
XM_026922683.2 mRNA downstream 56655 19891912 ~ 19896958 (-) False si:dkey-39a18.1
XM_026922682.2 mRNA downstream 57503 19891912 ~ 19896110 (-) True si:dkey-39a18.1
XM_034313287.1 mRNA downstream 85440 19859501 ~ 19868173 (-) True dyrk2
XM_034313288.1 mRNA downstream 85864 19859501 ~ 19867749 (-) False dyrk2
XM_026923434.2 mRNA upstream 282329 20242908 ~ 20256547 (-) True wif1
XM_026923807.2 mRNA upstream 499050 20459629 ~ 20500907 (-) True lmo3
XM_026923806.2 mRNA upstream 499050 20459629 ~ 20497375 (-) False lmo3
XM_026923805.2 mRNA upstream 499050 20459629 ~ 20496865 (-) False lmo3
XM_026923804.2 mRNA upstream 499050 20459629 ~ 20496492 (-) False lmo3
trnae-cuc_38 other downstream 1741220 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 1765615 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1861069 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1862991 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1869759 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 352488 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 461822 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 1500247 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 1500247 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 1500248 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile