RNA id: TU338098


Basic Information

Item Value
RNA id TU338098
length 4430
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G285428
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19962959 ~ 19967411 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaatatGTTGAAATTATTGTCAGCTGTAATTGCATGTATGCTCCAGCTGCAGCAGCTAGAGGTTAGGCTGAAAACTAACGGAGTATTCCTTCAAATCCAAGAGGCTGAAATGTAACGACCGACTTACCGAACAACCTGCATATGgatttttataattaacatgcaATCATCAGTTGTTTATTCATCTGTAACGAAATTCCGTAGATACGTTGGTTTCtttcattacccacaatgctgtttgatTACCTCCTGATAGTGGTGACAGTGGGATTTCTctctcgcttcatctctacctaaagatagcaatgcagcggcgctttagtctgtccagctctctcacctctccatctgtacactctgctcaaacactctgctcaaaccaatcatatagctgcactgcattctgggtcTTTGAGCCAAATGTTTGTTGTGTGGACTGATTCTACGTtgtatttctcattaatatgacattaagtgttgctggaaaatggtgattGAGAAgaggaaatgtgtgtttatccccaaaatcatacacacatttctcaaacaCATTTTACCATATCACGTTCTTTACATTTAAGTACTTTACACTGTTTTACACaagtggaataaaatgaaaGCCCTAATTTGAAGCGACAATATCAGTCTTAATTCCAGGTGCGGTTTCTATTCTTAATCTCTTGCATTCATTTTTGAGCTTTTTTTGAAATGAATCTAACAGGGAATGCTAGCCAGGAAACGTTTACGGCTTGCATGAAGACTGGCGTTGCCTCAGATTAGCGCTtttgttttgttttttttaccgAATCCAAACTTCTTGATTTTATTCCATGTTTTCAACTAGATGTTGCTAGCTAGATATGATGAATATGAACCGAGTCGTAGATGACAACCTGTTGTTTTGTTCTGGAAGAAAATGGGGATTATACTGACAGTCAAGAAAGTACATCACACTGTGTGGCAACAAGAGGTTACTATATTGTCAAGAAAGGTTCAGCCATAATCAGGAGCAATGGCATGACTTCATTCCTGCGGTCCCTATTTCCCTTTAAGCCGGAGATGGCTCGAAATAAATTAGAGAGCCGACGTGAAGTGGCACACAGAGACATAACCGCACTTCCTCCGTAACCTCTGAAGATAGCTGACCTGCATTCAGCTTCCCCCGCCAGCCTAGAACTTAGCGCCGAATGCTGCATACTAATAACCCCACCCCACTGACCTGCAAAGCCTCATGGACAATCAAAATGCAGGGCAGCCATCACCGATTGATGTGAGGTGAGCACTGGAAACAGATTAATTGGGTGAAATCTGTTTTAAGTTTCACTGCTACAGGGATGGAAGCTAATGGCTTGGCATTTGAGGCCAGCCAACATTTTGATTGATGGGCCACAAAACTGGATTTCTTTTGAATACAGCAGTTTTTGATGAAGCCGTTTTCGAAACCCGAGCGGATGAGTGATGCCACAAAGCTTTCCTTAATTCATGCCGCTTAGAGTAAACACGGGCAACGCGGAGTGAAACGTTGCTCATCTCGTGAGTGAAAATATATGGCTTTACTAACCGGTTTATTTCCATTTGGCCCCTTTACAAGCTTCCTTTCTTGGTGGAGCATTTATCAGTGTGTGAGCCAGGGGAGGCATCAGTCAGTGTTTCCGTCTTGATGAATAATTAGAGGCAGAGCTTTCAGGTCCAGCTTAGTCCCTCGTCAGCTGTCAGGCATAAGTCACTCGAGCTGAGCCGTAAACaaatcagtataaacacacactccaccaccCCCCACGCAGGACCATCCGTCAACAGGAAATAAGGAGTACATGGCACAGTGTAAATGCaatgtacacatgtacacacgcGTGACTAATACGAATATACTCTAGGCTTAATCAGGGACATAATGGAGCCCCATAGCTTCTGGTGCTTGAGTAGCTCGAGTAGCTTGAGTATGCATGTCCGTGTGTACCCATACAAACTAGACGTGCTGAGAAAACGGTCACACTTCAGTGATCCAGAAGCAGAAATGGGCCTGACATCAGCATATCTCAGAGGACTCAAGAGCGACGCATGAACCAGAAGGAGGGGAGGGGGAGAGCAGAGAGCACAGCGCAGTGCAGAGCAGTGTAGTGCAGTGAGAACTAGCAGAGGTCAGCTGACTGTGCAGATGTGCCCCGTTAGCTTTGTTCATTAACGAGCAGAGGTAGCCGCTGTGCGAGTCCATGCAGTGTAATGACAGGAAACAACGTGCAGCTTCCGTATGAGCAGCTAAAAAAATGGCCAGAGACCTGGCGTTAATGAGTTACCTACAGTACATGAGGCATTGATAATTTGTTCAATTAGTGCTCAGAGGCAAGCAGTCACTAATGATAATACTCAATGCTAATGCTTAGGCGATGCTACGGAAGTGCTCCGAGTTGGTTGATAAGATAATGAGTCATTCACAAAGGCTCCAGCAGGTGCCATTATTATTGCAAATGCAGGAGCCCTCTCATTGAATCTCATTGAACAATTACTATTCTGACTTAGCCCTGTAAGCCATGAGTCACCCCCTGGGAGAGAGGACTGGTACACTGCAAACCCTTTGCCCCCTGGCTAGATTGTGAAAATCGAAAGCAGGTGTTACACGTCAAGGGAGCCTAAatctttacaccacagcatctgtgttaaacagcagcagcaccacaGGTCACACTCCAACGTATCTTTGCTGAAAGCCCCGGAGGCTGTGAACAAGCAGAGTATCATTCTAAATCTAATGTTTCGATCGATAAGCAACATacattgttgttcttcttctttcggctgctccctttaggggtcgccacagcagatcattggtccacatatttgatttggcacagtttttacgccggatgtccttcctgacgcaaccctccccagttttatccgggcttgggaccaggactgggagtgcactgctgtgtgcaaccccagtggctggggtcggttccccggccgggaattgaacccgggcTGCGGCGATGAGAGCGCCATGGCCTAACCACTCatcctccagggacccttaATAAGCAGCATACATTAACACGCTTGATATCTACCTACCCGGTATAATCATTAATGAATCACTATCATGATATCCTAGAGATGTCCTAGCTATCATTGGTCTTAAGAATAACAATTTTAGccatttctgttattttagtAACCAAGCAATAATCAATCAAAtatcaacagcaacaacaaactTTCGTGTAGCTACACAGATCCATATAGAGTACTGCACGTCTTAGAAGTCAGCATTTTGCttgacaaaataaatacagataattGAATAATCACATGCACCCCTAATCAGTTCTTCCACAATGCTGAGCAAGTTCGTGGTTACGGATcataattagctgattagacgTTAAATTTGAAAATACCATGTTCTGCGTTTTTATTTTCAGCACTACAGTCTTGCTGGTACTATGTTAGCACACCGAACTATTGTGACGGATGTCATGTATCCTGAAAATGTAGAGTAGAATACCACAGTACCGCAGTTTGTCCTGCTCTCAGTTTTGTGTATCTATACATCCACCCCTACTGTTAACATTAGTACCATTAGTTCATTGAAATGTGTGTTTCTCATTTGAATAATCTGGAAGTGGTGCTGAGAATACCGGTCGATACGTCATGTTCTCCACAGTGTTTCTCATAAAGCAGCTGGAGAGAAAAGGAAACTGCAGCTCCTCATCCTATACCCACGGCTACACTGATGCCTGCAATATTGGTTAATCAGTATAGAGGCGTTCGGTCTTGGCGAGTTGACGATGCCTCATCAGGCAGTTAAGCTGTCAGTGCGGTTGCTGACAGCAGGTTCTTGGCGTAGCCGTCGCTTGCAGTACGTGCCAGCTGAGAGCCAAAGAACGGTCGCCTCCTCTAAATAAGCATCCGTTGCGATAAAAAGGCTCGATTCAGCGAGGCAGTCATGCCTGCTCTCGCAAACTGACCCCAGATCCGACACTGCGATTTGGACCCATCCATCACGGGACGGTCGCGCTGCATCATTATGTTGTTTACTGTCTGATGATTGCCTGCACCTTGCTAAGGGGGGCAAAAGCAGATTAGATAAATTACACTCCCATATGGCTCCTCAGATCCGCTATCATCTACCGTATCCAATGCTGTTAAATCACTGTGCATAATTCAATAGCTACGGGGGAGTTTGTTTCAACGCTGTGCCACTTTTTGGACATTTGCATACTACAAGTGCATTGAAATGCCTCCAGGACAATTTCAGTATTTCTCTCGCACgtaaatatacacaaaactGAAAGCAGGACAAACAAGAATAAAACTGCAAATACTCTGAATAATTCATCAGCTCTATTCTCGAGTGGTTTAAATTGACCTTGTGTTAAAACGGTGCCCTTCAACTCTCTGCAGAACTGTACAACAATAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338095 lncRNA downstream 2380 19953613 ~ 19960579 (-) True G285425
TU338109 lncRNA downstream 42625 19916609 ~ 19920334 (-) True G285437
TU338032 lncRNA downstream 243824 19710897 ~ 19719135 (-) True G285362
TU338029 lncRNA downstream 283684 19678500 ~ 19679275 (-) False rap1b
TU338031 lncRNA downstream 285364 19676840 ~ 19677595 (-) True G285361
TU338096 lncRNA upstream 57332 20024743 ~ 20026895 (-) True G285426
TU338286 lncRNA upstream 311115 20278526 ~ 20291863 (-) True G285593
XR_004579993.1 lncRNA upstream 339932 20307343 ~ 20312535 (-) True LOC117599590
TU338324 lncRNA upstream 422324 20389735 ~ 20390426 (-) True G285630
TU338338 lncRNA upstream 434423 20401834 ~ 20402322 (-) True G285641
XM_026922802.2 mRNA downstream 40487 19898260 ~ 19922472 (-) True cand1
XM_026922683.2 mRNA downstream 66001 19891912 ~ 19896958 (-) False si:dkey-39a18.1
XM_026922682.2 mRNA downstream 66849 19891912 ~ 19896110 (-) True si:dkey-39a18.1
XM_034313287.1 mRNA downstream 94786 19859501 ~ 19868173 (-) True dyrk2
XM_026923434.2 mRNA upstream 275497 20242908 ~ 20256547 (-) True wif1
XM_026923807.2 mRNA upstream 492218 20459629 ~ 20500907 (-) True lmo3
XM_026923806.2 mRNA upstream 492218 20459629 ~ 20497375 (-) False lmo3
XM_026923805.2 mRNA upstream 492218 20459629 ~ 20496865 (-) False lmo3
XM_026923804.2 mRNA upstream 492218 20459629 ~ 20496492 (-) False lmo3
trnae-cuc_38 other downstream 1750566 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 1774961 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1870415 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1872337 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1879105 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 345656 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 454990 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 1493415 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 1493415 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 1493416 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile