RNA id: TU338301


Basic Information

Item Value
RNA id TU338301
length 1700
RNA type TUCP
GC content 0.43
exon number 3
gene id G285607
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 20313067 ~ 20320050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaacatccattctaaaaataatctaataattttTGCTGCTCAGGACCCTATTAACTGTAAACgaaattccacagaccccctcagtcatctacattttatatacataatccagctattcaaatattaggctcattacttaaatgtgtacagtactgtttcggctatttattggagccgtAGAGCTTTTCCTTCTTGAACGTTCCACTCATATAAcagattttttattaaaattatcatTCAGATTcaagttaacattatttataggcctaccTGTTTTTAAGTTTGGATTTAACGCATTCAATTccagtgaccagtcaaacaggctaatgactataattaatataataactttgataatggtgagttgtgatttccaccactgaaaaaacatgcacacctgTCTATGCTTCTTGGACCCCACTTGGAGAACCATGGGATGTTTTTATCCGCATGGAACTACTAAAATGGCTTAGGAATAACGTCAGGGCCTATGAATATGCATTAATATGCAATGTGTAAATGTCCTCCTGCAATCCCAGCTAGTTTAGCACACCGTTTCTGTAGTTAAACGTTTCTAATCATTTGGAGACATGACAGGTTCAAAGTCATGAAGACACGTTAATCACTCTTTTACTAACTGAGCTCATATGTAATGCGCTGAGATCAGTTTTCTTCATAATAACGAAATatctgttttaaatgttaatacgTGTAATCAACCATTCAAAaggagtttaaaatgtttttcacatttttatgatAGGTGCAATTTAAAGTTAATCAACCTTCAAACTATTTCTTGTGTATGAATTAACCGAAAAAGAAAACTAATACTAAATATATGTgcttataatataattaaaacaaatgaaattatgCAACATACCCATTTCCTTGGTCTTCCTCTGGGTCTCTTCTCCCCTGTGGTCTCAGCTTTCTTCTGTGCTGCTTTGGAAGGACCCTTGTTCTTGCTTCCCTTGGGACGTCCTCTTGGACGTTTAGGGACAGGTTCACCCGTGGGTTCTTGCTGCGGCTTCCTGGGTCTGCCCGGTCCTCTCTTCGGAGGCTCGGCGGCCGGAGCGGGCTGCTCGCGGGATCCCGAGGCTTCGGCGGCTTCCTCACCGCGCGCGCTCATTGCAATGACTCAGAGCCAAACGGGGAAGTTCCTGTAGATCTGTGCTCCTGCAGCGCGCGCGCTCCGTGTCGCGCACCGGACGTCCTGCTGCAGAATTACGAGACGATGGGTGACGGGGGATCCACTGTAGTCTGAGCAAGGTCTGAGAATAACGGTAATGAGTAAACCACGGCAGGTAAGACGTTAGGGATGCAAAACAGAATCTAAAAAGTGGGCCTCGTGATCCTGGAGGTGTCGCGATTTGCACGTGCTGCCCGCTTGAGTATTTGGCACacgcaagaaaaaaaaaaaaaaaaaaaaacacgtctcCTCTTTAGAACCGAGTGGGGGTGGCTATAGTCATAAAATAAGAGAGCGATCAATAAGAGTGTTGGTGTTGTCCGTGCGGACGAGCTCGAGACATTTGCAGAGGGAAATCGGCGCGCTGTCAGATCTGCGCGCTGTGCTCAGTGGAGTTCCCAAAAAACTTCGAGGAAAAACTTTTCTACACGGGTCAGCTTAGGAAAAAACATTCGCCTTTTAAATGCATCTCTGTTGCCCACACGGAAACAAGTCCACTAAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579993.1 lncRNA downstream 532 20307343 ~ 20312535 (-) True LOC117599590
TU338286 lncRNA downstream 21204 20278526 ~ 20291863 (-) True G285593
TU338096 lncRNA downstream 286172 20024743 ~ 20026895 (-) True G285426
TU338098 lncRNA downstream 345656 19962959 ~ 19967411 (-) True G285428
TU338095 lncRNA downstream 352488 19953613 ~ 19960579 (-) True G285425
TU338324 lncRNA upstream 69685 20389735 ~ 20390426 (-) True G285630
TU338338 lncRNA upstream 81784 20401834 ~ 20402322 (-) True G285641
TU338339 lncRNA upstream 82972 20403022 ~ 20403257 (-) True G285642
TU338400 lncRNA upstream 120171 20440221 ~ 20441928 (-) True G285693
TU338510 lncRNA upstream 258206 20578256 ~ 20578483 (-) True G285791
XM_026923434.2 mRNA downstream 56520 20242908 ~ 20256547 (-) True wif1
XM_026922802.2 mRNA downstream 390595 19898260 ~ 19922472 (-) True cand1
XM_026922683.2 mRNA downstream 416109 19891912 ~ 19896958 (-) False si:dkey-39a18.1
XM_026922682.2 mRNA downstream 416957 19891912 ~ 19896110 (-) True si:dkey-39a18.1
XM_034313287.1 mRNA downstream 444894 19859501 ~ 19868173 (-) True dyrk2
XM_026923807.2 mRNA upstream 139579 20459629 ~ 20500907 (-) True lmo3
XM_026923806.2 mRNA upstream 139579 20459629 ~ 20497375 (-) False lmo3
XM_026923805.2 mRNA upstream 139579 20459629 ~ 20496865 (-) False lmo3
XM_026923804.2 mRNA upstream 139579 20459629 ~ 20496492 (-) False lmo3
XM_026923419.2 mRNA upstream 389919 20709969 ~ 20712919 (-) True tmem121b
trnae-cuc_38 other downstream 2100674 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 2125069 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 2220523 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 2222445 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 2229213 18083783 ~ 18083854 (-) True trnaa-ugc_11
trnaa-ugc_16 other upstream 102351 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 1140776 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 1140776 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 1140777 21460827 ~ 21471100 (-) False LOC113544587
XR_004579972.1 other upstream 1140777 21460827 ~ 21471055 (-) False LOC113544587

Expression Profile