Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU338631 |
| length | 236 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G285911 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 20905423 ~ 20905658 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU338627 | lncRNA | downstream | 8936 | 20896281 ~ 20896487 (-) | True | G285907 |
| TU338572 | lncRNA | downstream | 128515 | 20704057 ~ 20776908 (-) | True | G285852 |
| TU338579 | lncRNA | downstream | 153156 | 20749766 ~ 20752267 (-) | True | G285859 |
| XR_004579968.1 | lncRNA | downstream | 156203 | 20736968 ~ 20749220 (-) | True | LOC117599568 |
| TU338510 | lncRNA | downstream | 326940 | 20578256 ~ 20578483 (-) | True | G285791 |
| TU338654 | lncRNA | upstream | 22863 | 20928521 ~ 20930920 (-) | True | G285934 |
| TU338918 | lncRNA | upstream | 199150 | 21104808 ~ 21162920 (-) | True | G286192 |
| TU338938 | lncRNA | upstream | 235816 | 21141474 ~ 21142688 (-) | True | G286212 |
| TU339022 | lncRNA | upstream | 329524 | 21235182 ~ 21235425 (-) | True | G286272 |
| TU339053 | lncRNA | upstream | 398597 | 21304255 ~ 21304529 (-) | True | G286301 |
| XM_026922583.2 | mRNA | downstream | 10793 | 20792473 ~ 20894630 (-) | True | tmem178b |
| XM_026923824.2 | mRNA | downstream | 175786 | 20715040 ~ 20729637 (-) | False | mkrn1 |
| XM_026923823.2 | mRNA | downstream | 175786 | 20715040 ~ 20729637 (-) | True | mkrn1 |
| XM_026923419.2 | mRNA | downstream | 192504 | 20709969 ~ 20712919 (-) | True | tmem121b |
| XM_026923804.2 | mRNA | downstream | 408931 | 20459629 ~ 20496492 (-) | False | lmo3 |
| XM_026923081.2 | mRNA | upstream | 34087 | 20939745 ~ 21133493 (-) | False | btbd11a |
| XM_026923080.2 | mRNA | upstream | 34087 | 20939745 ~ 21133493 (-) | True | btbd11a |
| XM_034313250.1 | mRNA | upstream | 34087 | 20939745 ~ 21051413 (-) | False | btbd11a |
| XM_026922827.2 | mRNA | upstream | 259048 | 21164706 ~ 21172260 (-) | False | si:dkey-222f8.3 |
| XM_026922826.2 | mRNA | upstream | 259048 | 21164706 ~ 21171554 (-) | True | si:dkey-222f8.3 |
| trnaa-ugc_16 | other | downstream | 482951 | 20422401 ~ 20422472 (-) | True | trnaa-ugc_16 |
| TU338301 | other | downstream | 585373 | 20313067 ~ 20320050 (-) | True | G285607 |
| trnae-cuc_38 | other | downstream | 2693030 | 18212322 ~ 18212393 (-) | True | trnae-cuc_38 |
| XR_003403330.2 | other | downstream | 2717425 | 18156824 ~ 18187998 (-) | True | cald1a |
| trnaa-ugc_14 | other | downstream | 2812879 | 18092473 ~ 18092544 (-) | False | trnaa-ugc_14 |
| XR_004579970.1 | other | upstream | 555168 | 21460826 ~ 21471100 (-) | False | LOC113544587 |
| XR_004579971.1 | other | upstream | 555168 | 21460826 ~ 21471056 (-) | True | LOC113544587 |
| XR_003404518.2 | other | upstream | 555169 | 21460827 ~ 21471100 (-) | False | LOC113544587 |
| XR_004579972.1 | other | upstream | 555169 | 21460827 ~ 21471055 (-) | False | LOC113544587 |
| TU339722 | other | upstream | 1580578 | 22486236 ~ 22489467 (-) | True | G286852 |
