RNA id: TU338654


Basic Information

Item Value
RNA id TU338654
length 2380
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G285934
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 20928521 ~ 20930920 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCACTTCTTTAATATATCAGTTTTTCATATTCACAACAAATACATTAAGCTCTTTCTCCTTTTATATTATACAgtcttaaatatttttacacagatttttttttcagaatttcatCTATCAAAATCTCTTTTCTTAACCTTTATTTCTTCATTGGAAACATTGTATAACTCATttcattgtttgttttaacTCCATGCCTCCTAGCAAACAGACAGTATTTTCTTTGTACAGCTATTTACAAGTGAAAAGAGTCTCCCAAAAGCTTCTATGATGGTTCTCGGTTGAGTTCATTTATACTAGGACTTTAAGGTGCAGGCAAGGCAAAGGAACAAAAGGAGATACGAGGGAGTCAACTAAGAAACAAACCAGGATGGAGAAGGAGGGTGTGAGAAGGAAATGAGTTTTAGCAGGCcctaaacaggaaaaaaaaagatccccAAGTGTGCCACAATCAGAGCGCAATCATAACATTCTCATATAAAATAAGGAACtcttgaaaataaatacagcactCTTAAAAACTTGCCACTTTGTGTATGCCGACTAAAATGAGGATTGACATAGTCCATGGCATGTGGGCAAGAAGGAGTCCATTTAAACATCTGAAAATGTATCAGGCCACCAAGCAGGTCATATCCAACAGAATCAGAACGTCCTCGTCGATGCTTTCTGCTTAATGACTTAATACAGAGCACAATcaaaaaaaagagagaaagaaaattccttcaaaataaaaataggcCATTAGGTACAAGTCCTTATATGGAACTATGTAACAGAGTGCAAGAATCAGGGTAACTGTAGCCTTCAGTCAATCTGTGTGAGGATCACTGAGAGGATCTGTAGCTTTACTTGAGACACTGAgaaatgtgtagtctcatgCAATACAAGGGCAGACAAATTTACACCATTCGTTGTGTCTTAGATCAGAAATAGCCAACCAAAGGCTTTCATCAACACAGTgtcacaaatgtttttttaaatttagctttATACCCTTGGCCATATCTCATAATGTGTAGCTTTAAATAATGTGTAGTTTTAAATCCTGTTGtgattgagattttttttaagtcatgcTTTAAACGCTCTGACAAAATGTTCTGTCCATAGAAAGGCAAATTGCTTGTTTGCATCAATCTGCTTTAGAAAAGTGCAAAGGACACACAGCTTATCATCCATTTACGCAATCACAGAAaacaaacacttaaaaataacCCCCTCCGAGaggtgaagagaaaaaaaaaaaaaaaacacacacacacacacaataaaattaaagctacataaataaatctacatttGCAGGCCTGCCTGTCCaagcaaacaaatgaaacaacataaaaataactGTTTTAATACCAAACACACTGGAATGAAGACGCATCAAACTTCAAATGTTTAGTCTCCAAGGATGGCGTGCCTCCATCGAAGTCTGTAGTCAAAGCCAGGAAGAAAAGACGAAGCGTAGATTTTGCCTGGGGACGTCTGCGAGTGCAACATTTCACACGGCCACCTCACAGTGAGTgtagcagcagcaacaacataCGCTTCAGACACGACGCAAAAGATCTACAGTGTGCAACTAAACATGCTGATGGAGAATCAGCAACTGCTATCCATAAACCGATCCTACTTCAGCAGTCTTTCAAACACGTCCCTTAATTCACCTAAAAGTGAAGCAGCTCGTTTACTTAATGAACATGTGACACCTGAAGGTTTGGTAAAACCTGTAACACAATGTTCCAGACTCTGTTTCCATGTGACACCGAGACAGAGTTCCTTTCATTTAGCTCACACAAACCATGTATGAACAGggaaaataatgaagaaaagaaaaccagtTCCAGCTGACAATAAAGCTTGCTGCTTCTCACAGTAACCTTGTCCTATTAAACAGAATATTTGCTTGGGCCATACTGGATAACTCCGAAAATAGTCAGAAGTGTTGTCAGTACTTCTGATAATTTAACTTGAAGGAATGTACTGGATGTCTCTAAACTAAATGACATTCAAGTCTTCTGGCTTGAATGCCACCCTATGAGCAATGAGCAGGGCGGGGCACTCTCAAATACAGAATCACACGACTGGTCAAAGTGTTGgtcctgcactctgattggccAACGCTAACTTATAACAATGTGAGGAGTGGATGGGGCGTCATTAAGTTCCATCATAATAGCAAGACTTTAATTTCCTTCATTTGTCCTCTTCTTTCATCCAGTGGCCATCCTCATGTTCCTGCAAATCAGtgtcatttgtattttatgCGCTTTTCCTGGTTTTGGGTTGttgtggtggttttttttttaatcagccgTGATACCCagctgagacttttttttttttttttttttttttttaaactaattttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338631 lncRNA downstream 22863 20905423 ~ 20905658 (-) True G285911
TU338627 lncRNA downstream 32034 20896281 ~ 20896487 (-) True G285907
TU338572 lncRNA downstream 151613 20704057 ~ 20776908 (-) True G285852
TU338579 lncRNA downstream 176254 20749766 ~ 20752267 (-) True G285859
XR_004579968.1 lncRNA downstream 179301 20736968 ~ 20749220 (-) True LOC117599568
TU338918 lncRNA upstream 173888 21104808 ~ 21162920 (-) True G286192
TU338938 lncRNA upstream 210554 21141474 ~ 21142688 (-) True G286212
TU339022 lncRNA upstream 304262 21235182 ~ 21235425 (-) True G286272
TU339053 lncRNA upstream 373335 21304255 ~ 21304529 (-) True G286301
TU339057 lncRNA upstream 478124 21409044 ~ 21409298 (-) True G286305
XM_026922583.2 mRNA downstream 33891 20792473 ~ 20894630 (-) True tmem178b
XM_026923824.2 mRNA downstream 198884 20715040 ~ 20729637 (-) False mkrn1
XM_026923823.2 mRNA downstream 198884 20715040 ~ 20729637 (-) True mkrn1
XM_026923419.2 mRNA downstream 215602 20709969 ~ 20712919 (-) True tmem121b
XM_026923804.2 mRNA downstream 432029 20459629 ~ 20496492 (-) False lmo3
XM_026923081.2 mRNA upstream 8825 20939745 ~ 21133493 (-) False btbd11a
XM_026923080.2 mRNA upstream 8825 20939745 ~ 21133493 (-) True btbd11a
XM_034313250.1 mRNA upstream 8825 20939745 ~ 21051413 (-) False btbd11a
XM_026922827.2 mRNA upstream 233786 21164706 ~ 21172260 (-) False si:dkey-222f8.3
XM_026922826.2 mRNA upstream 233786 21164706 ~ 21171554 (-) True si:dkey-222f8.3
trnaa-ugc_16 other downstream 506049 20422401 ~ 20422472 (-) True trnaa-ugc_16
TU338301 other downstream 608471 20313067 ~ 20320050 (-) True G285607
trnae-cuc_38 other downstream 2716128 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 2740523 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 2835977 18092473 ~ 18092544 (-) False trnaa-ugc_14
XR_004579970.1 other upstream 529906 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 529906 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 529907 21460827 ~ 21471100 (-) False LOC113544587
XR_004579972.1 other upstream 529907 21460827 ~ 21471055 (-) False LOC113544587
TU339722 other upstream 1555316 22486236 ~ 22489467 (-) True G286852

Expression Profile