RNA id: TU338918


Basic Information

Item Value
RNA id TU338918
length 2105
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G286192
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 21104808 ~ 21162920 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTgaacaaaaaaaggcaaatatttaatcaaaagtgaataaaatgttttattaatgtttagttGTCACTAAAATCATGTTTGAAAGTGGTCCTCGATTGTCTGTTTTAACATTCAATTTGAAGTGTGCTGTCGAGTTTGAGATAACACCTTGTCCATGCAGGCATGCCTTCCATTCCACCATGCAGATAAAGAAAACGTACAGTTGATAACACACTTAAAAATAGCACCTTACAATAGTTACCTACTTTAATGTGACAAAAGAATTTAAACACACAGGAAACAaaactgattaatttttttttcaaaaactatTTCATACAGTTGAGTACAAAAGTTTGtatacccttaggacaaaatgaagaagacagagaaaaatgtaatttatagcaataagacatttagtgtgttagatttcacagatgttccttcctTATTACAAGTAAGAAAATTgtcaaatagaaaaaaatgctattattaCAATTTGCGTCTCCATTGCTGTATTTGATTTTAATATTCTCCAGTAACTTGTCTGCTCACactttgcctttataactgcctCCAACCTCGTCCATTTCCTTTGAACAGCTCTTCCCCCAGCagcccacccacccacacatcCTTCTAGAGATATCTGTTCTAACTCAGCCAGACAGTTTGTCAAAtctttgcccattcttcttgatAAATGTCTGTTCTATCTATAGTAGATGTCAAACCCTGCCTTCTTATACTacagttatttttaaactattttccTGTTGATTTTGCCTCATGTATTGTCCTGCTATATACAcaaatttcacatttaacaTCTTGGAattagattttcttttattggAGATACCTTTCAAAATAGTGATGCATTTTCCTTCTGTTCCCTTCACACACCACGGGGAATGCAAACTTTTGTATAACTTTTCAGTTATGTAAGTGATACAGAATAAACCAGAAAGACAATTAGAACTGCAAGCTTTAACACATTGGATGTCTGTCAGTCTTGCATATGTAGTGGCAGCAAACATGGGCTCAGCTGATCTTTCTTACCAAAAGAATTCACTGTAAATCAAAGATAAAATCAAATTCTTCAAAGttaaatcaataaagttaagGTGTGATGTGACCAGGAGTCTATGCCACTACATCATATATTCCCTAATTCACACTATCTACTTCCAGGACTTCCTAGTTGTCTTGGCTGTCTTGCTGTACCTCTGATGGTCACTGACACGGTTGCGCAGCACATTGATGTCATACTTCTGCCTCTTCAGCTTCTCACCCAGGTCAAACTTCTCAGCATGTAGCTGCTGCAGCCACTGCCAGAGATCTCTGGCCTTCTCAGCCAGTTTCTCCTGGTTAAGGTGGTCGATGTTGAGTGGCTTGCGGCGCTCCATGAGGGCCTTTGTCTTCTTCTCACGTTCTGTCAGCTTCTTGCCCTTCTTCTGTTCCACCTTCTGCAGGTAGCCTCCATAGCCCTTATTGGTGAGGAGTTTCTTCTTCTTGGCATCCTCCTCAGCCCGGAGTTTAGCTGCCTCCTCCTCACGCCGTGCCCTTTCCTCAGCCAAACGAGCCTGTCTCTCACGATCCTGCTCGGCTCGAATGCGCTGCTGCTCTGCACGATCTGCACGTCTCCGCTCAATGCGGGTCTTCAGGGCTACcagctcctcttcctctttctgccTGTTGGTAAAGTGTGCCTCAATGAGGCTCTGAAGCTCATTGTAGTCCTTCTCGACACGTTTACGATGGAGGTCGTCAAAGTCCACCTTCTCGCCATCGGGGAGCTTGGGAGGGACAATGGTGGGGACATACAACTTAGGCTTAGGCTTGGagtcttcttcctcttcttcctgcaCCTCATTTTCTTCCTCTGCCTCATTTTCATCATCCTCTATTTGAGGGGCCTCCTCTAcattctcctcttcctcagcctcttcctctgcttcctcctcctcttcttcataTTCCTCCACAATCTCCTCAGTGTCAGACATTGTAGCTATGTTGTGCCCTGTCTGTGAGAGAACAGAAGGTTGAGGAACAGCCTCAGCTCACCACTTACCAGCTGGAGATAAGAAGACTGAAGGGAGTGAGCTgaggaagaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338654 lncRNA downstream 173888 20928521 ~ 20930920 (-) True G285934
TU338631 lncRNA downstream 199150 20905423 ~ 20905658 (-) True G285911
TU338627 lncRNA downstream 208321 20896281 ~ 20896487 (-) True G285907
TU338572 lncRNA downstream 327900 20704057 ~ 20776908 (-) True G285852
TU339022 lncRNA upstream 72262 21235182 ~ 21235425 (-) True G286272
TU339053 lncRNA upstream 141335 21304255 ~ 21304529 (-) True G286301
TU339057 lncRNA upstream 246124 21409044 ~ 21409298 (-) True G286305
XR_004579864.1 lncRNA upstream 328721 21491641 ~ 21492712 (-) True LOC117599448
TU339096 lncRNA upstream 333457 21496377 ~ 21496619 (-) True G286337
XM_034313250.1 mRNA downstream 53395 20939745 ~ 21051413 (-) False btbd11a
XM_026922583.2 mRNA downstream 210178 20792473 ~ 20894630 (-) True tmem178b
XM_026923824.2 mRNA downstream 375171 20715040 ~ 20729637 (-) False mkrn1
XM_026923823.2 mRNA downstream 375171 20715040 ~ 20729637 (-) True mkrn1
XM_026923419.2 mRNA downstream 391889 20709969 ~ 20712919 (-) True tmem121b
XM_026922827.2 mRNA upstream 1786 21164706 ~ 21172260 (-) False si:dkey-222f8.3
XM_026922826.2 mRNA upstream 1786 21164706 ~ 21171554 (-) True si:dkey-222f8.3
XM_034313152.1 mRNA upstream 11264 21174184 ~ 21179511 (-) True LOC113531875
XM_026922871.2 mRNA upstream 27005 21189925 ~ 21226343 (-) False ppfibp1a
XM_026922869.2 mRNA upstream 27005 21189925 ~ 21226343 (-) True ppfibp1a
trnaa-ugc_16 other downstream 682336 20422401 ~ 20422472 (-) True trnaa-ugc_16
TU338301 other downstream 784758 20313067 ~ 20320050 (-) True G285607
trnae-cuc_38 other downstream 2892415 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 2916810 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 3012264 18092473 ~ 18092544 (-) False trnaa-ugc_14
XR_004579970.1 other upstream 297906 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 297906 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 297907 21460827 ~ 21471100 (-) False LOC113544587
XR_004579972.1 other upstream 297907 21460827 ~ 21471055 (-) False LOC113544587
TU339722 other upstream 1323316 22486236 ~ 22489467 (-) True G286852

Expression Profile