Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU339022 |
| length | 244 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 1 |
| gene id | G286272 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047612.1 |
| NCBI id | CM018558.1 |
| chromosome length | 23372418 |
| location | 21235182 ~ 21235425 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU338918 | lncRNA | downstream | 72262 | 21104808 ~ 21162920 (-) | True | G286192 |
| TU338938 | lncRNA | downstream | 92494 | 21141474 ~ 21142688 (-) | True | G286212 |
| TU338654 | lncRNA | downstream | 304262 | 20928521 ~ 20930920 (-) | True | G285934 |
| TU338631 | lncRNA | downstream | 329524 | 20905423 ~ 20905658 (-) | True | G285911 |
| TU338627 | lncRNA | downstream | 338695 | 20896281 ~ 20896487 (-) | True | G285907 |
| TU339053 | lncRNA | upstream | 68830 | 21304255 ~ 21304529 (-) | True | G286301 |
| TU339057 | lncRNA | upstream | 173619 | 21409044 ~ 21409298 (-) | True | G286305 |
| XR_004579864.1 | lncRNA | upstream | 256216 | 21491641 ~ 21492712 (-) | True | LOC117599448 |
| TU339096 | lncRNA | upstream | 260952 | 21496377 ~ 21496619 (-) | True | G286337 |
| TU339340 | lncRNA | upstream | 338400 | 21573825 ~ 21574100 (-) | True | G286546 |
| XM_026922871.2 | mRNA | downstream | 8839 | 21189925 ~ 21226343 (-) | False | ppfibp1a |
| XM_026922869.2 | mRNA | downstream | 8839 | 21189925 ~ 21226343 (-) | True | ppfibp1a |
| XM_034313364.1 | mRNA | downstream | 19635 | 21189925 ~ 21215547 (-) | False | ppfibp1a |
| XM_034313152.1 | mRNA | downstream | 55671 | 21174184 ~ 21179511 (-) | True | LOC113531875 |
| XM_026922827.2 | mRNA | downstream | 62922 | 21164706 ~ 21172260 (-) | False | si:dkey-222f8.3 |
| XM_026943470.2 | mRNA | upstream | 225402 | 21460827 ~ 21465533 (-) | False | LOC113544587 |
| XM_034313134.1 | mRNA | upstream | 368475 | 21603900 ~ 21630503 (-) | False | nrf1 |
| XM_026943465.2 | mRNA | upstream | 368475 | 21603900 ~ 21630503 (-) | True | nrf1 |
| XM_026943483.2 | mRNA | upstream | 496164 | 21731589 ~ 21751582 (-) | True | ints13 |
| XM_034313049.1 | mRNA | upstream | 526256 | 21761681 ~ 21782085 (-) | True | cog5 |
| trnaa-ugc_16 | other | downstream | 812710 | 20422401 ~ 20422472 (-) | True | trnaa-ugc_16 |
| TU338301 | other | downstream | 915132 | 20313067 ~ 20320050 (-) | True | G285607 |
| trnae-cuc_38 | other | downstream | 3022789 | 18212322 ~ 18212393 (-) | True | trnae-cuc_38 |
| XR_003403330.2 | other | downstream | 3047184 | 18156824 ~ 18187998 (-) | True | cald1a |
| trnaa-ugc_14 | other | downstream | 3142638 | 18092473 ~ 18092544 (-) | False | trnaa-ugc_14 |
| XR_004579970.1 | other | upstream | 225401 | 21460826 ~ 21471100 (-) | False | LOC113544587 |
| XR_004579971.1 | other | upstream | 225401 | 21460826 ~ 21471056 (-) | True | LOC113544587 |
| XR_003404518.2 | other | upstream | 225402 | 21460827 ~ 21471100 (-) | False | LOC113544587 |
| XR_004579972.1 | other | upstream | 225402 | 21460827 ~ 21471055 (-) | False | LOC113544587 |
| TU339722 | other | upstream | 1250811 | 22486236 ~ 22489467 (-) | True | G286852 |
