RNA id: TU339533


Basic Information

Item Value
RNA id TU339533
length 357
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G286700
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 22116597 ~ 22116953 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagccactctcttgccattgcttctttttttcgttttaaaaagcagacttaacatttgcctgtttcagctgctaattagaagacaatgagcatgtgatgttttgtgcagtactgcgtgtatttatcaagcaattaaaatgccccttcccgagcccagaacaaggcgtctgtggatgagggtccgaagcaaggactggtgggacaacgtcgtcttgcaccacttcacagacgaggagtggaaggagaattttaggatgacacgacagtcatttatgacactctgctcagtggtggaggggaacatggcacctggtgaggctacagtcagagccccaataccgccgacagccgtgcgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339531 lncRNA downstream 18776 22097608 ~ 22097821 (-) True G286698
TU339527 lncRNA downstream 41318 22072211 ~ 22075279 (-) True G286694
TU339429 lncRNA downstream 329225 21786152 ~ 21787372 (-) True G286613
XR_003404520.2 lncRNA downstream 464166 21651622 ~ 21652431 (-) True LOC113544611
XR_003404510.2 lncRNA downstream 518197 21584065 ~ 21598400 (-) True LOC113544500
XR_004579983.1 lncRNA upstream 31320 22148273 ~ 22149018 (-) True LOC113544512
TU339588 lncRNA upstream 72366 22189319 ~ 22235065 (-) True G286740
TU339673 lncRNA upstream 218951 22335904 ~ 22453567 (-) True G286810
TU339695 lncRNA upstream 325097 22442050 ~ 22447429 (-) True G286832
TU339702 lncRNA upstream 353458 22470411 ~ 22471009 (-) True G286838
XM_026943444.2 mRNA downstream 27178 22083291 ~ 22089419 (-) False plekha5
XM_034313212.1 mRNA downstream 27183 21986749 ~ 22089414 (-) False plekha5
XM_026943324.2 mRNA upstream 301152 22418105 ~ 22423754 (-) True lrrc4.1
XM_034313083.1 mRNA upstream 380436 22497389 ~ 22523790 (-) False si:dkey-159a18.1
XM_034313084.1 mRNA upstream 380436 22497389 ~ 22523790 (-) False si:dkey-159a18.1
XM_026943417.2 mRNA upstream 380436 22497389 ~ 22523790 (-) True si:dkey-159a18.1
XM_026943418.2 mRNA upstream 384162 22501115 ~ 22523790 (-) False si:dkey-159a18.1
XR_004579970.1 other downstream 645497 21460826 ~ 21471100 (-) False LOC113544587
XR_003404518.2 other downstream 645497 21460827 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other downstream 645541 21460826 ~ 21471056 (-) True LOC113544587
XR_004579972.1 other downstream 645542 21460827 ~ 21471055 (-) False LOC113544587
trnaa-ugc_16 other downstream 1694125 20422401 ~ 20422472 (-) True trnaa-ugc_16
TU339722 other upstream 369283 22486236 ~ 22489467 (-) True G286852

Expression Profile