RNA id: TU339702


Basic Information

Item Value
RNA id TU339702
length 295
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G286838
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 22470411 ~ 22471009 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTttgcactgagagagagagaatgcgagagagcagtgtttCAGGTGAGCAGGGAGTCGCAGAGAGCGCGTGAGCTCCTTACCCAGGTGAGCTGTGTCCCACACCACCTTCTGAACCATCAGCCTGCACGCGCCATCTCCTGCAGCTCCTTAAACACTGTGTATTCCTGATCAgcgtttccacacacacacacaaacatacacacaaatacacacaaatacacacacaaacacacacgcggAACTGCCTGCGACTGAACGCAACCTGCTGTGATCTGCACTTGAAGACAGGTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339673 lncRNA downstream 16844 22335904 ~ 22453567 (-) True G286810
TU339695 lncRNA downstream 22982 22442050 ~ 22447429 (-) True G286832
TU339588 lncRNA downstream 235346 22189319 ~ 22235065 (-) True G286740
XR_004579983.1 lncRNA downstream 321393 22148273 ~ 22149018 (-) True LOC113544512
TU339533 lncRNA downstream 353458 22116597 ~ 22116953 (-) True G286700
TU339790 lncRNA upstream 72922 22543931 ~ 22544398 (-) True G286907
TU339787 lncRNA upstream 157848 22628857 ~ 22629101 (-) True G286904
TU340430 lncRNA upstream 759885 23230894 ~ 23231145 (-) True G287484
TU340444 lncRNA upstream 864316 23335325 ~ 23335587 (-) True G287493
XM_026943324.2 mRNA downstream 46657 22418105 ~ 22423754 (-) True lrrc4.1
XM_026943444.2 mRNA downstream 380992 22083291 ~ 22089419 (-) False plekha5
XM_034313211.1 mRNA downstream 380997 21986749 ~ 22089414 (-) False plekha5
XM_034313083.1 mRNA upstream 26380 22497389 ~ 22523790 (-) False si:dkey-159a18.1
XM_034313084.1 mRNA upstream 26380 22497389 ~ 22523790 (-) False si:dkey-159a18.1
XM_026943417.2 mRNA upstream 26380 22497389 ~ 22523790 (-) True si:dkey-159a18.1
XM_026943418.2 mRNA upstream 30106 22501115 ~ 22523790 (-) False si:dkey-159a18.1
XM_026943474.2 mRNA upstream 159038 22630047 ~ 22659391 (-) False LOC113544588
XR_004579970.1 other downstream 999311 21460826 ~ 21471100 (-) False LOC113544587
XR_003404518.2 other downstream 999311 21460827 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other downstream 999355 21460826 ~ 21471056 (-) True LOC113544587
XR_004579972.1 other downstream 999356 21460827 ~ 21471055 (-) False LOC113544587
trnaa-ugc_16 other downstream 2047939 20422401 ~ 20422472 (-) True trnaa-ugc_16
TU339722 other upstream 15227 22486236 ~ 22489467 (-) True G286852

Expression Profile