RNA id: XM_026909970.2


Basic Information

Item Value
RNA id XM_026909970.2
length 2240
RNA type mRNA
GC content 0.46
exon number 12
gene id cd36
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4044706 ~ 4060514 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCTTTTCTCccctcaccttttttttttctgtttcttttcattgtttttaattattattaatttgatttCTCCTGCATCATGAACCATCTGAAATGCTGCTTCATCGCCGGGAGCGTCATCGGCGCGGTCGCGTGCGCGCTCGGTCTCATCCTCATTCCAGTGGGCGACTCTGTGATCGGGAGCACTGTCAAAAAGGAAGCCGTGTTGGAGGAAGGAACCACGGCGTACGAGAACTGGATCTCGGCCGGCGCGCCGGTGTATCGCCAGTTCTGGCTGTTTGAAGTGCAAAATCCAGACAAAGTGTTGAACGGCAGCATTCCTCAGCTCCAGCAGAAAGGACCGTACACGTACAGGACGAGGTACATCCCCAAAGAGAACGTGACGTTCTACCAGAACCACACCGTGTCCTTCCTGCTGCCGTCAGGAGCCATCTTTGAGCCGAGCATGTCTGTAGGACCAGAGGAGGACGTGGTGACCTCACTGAACCTCGCTGTGGCTggTGTCTACAGTCTGCTAAATCACATGGTGGCTAATATGATGATCCAACTGAGCGGCTCGTCTCTGTTTCAGAAGAGAACCGTGAAGGAGCTGTTATGGGGCTACACAGACCCCATGCTCAAAGTAAAACTGGGAGTTTTTCACCCGTATAACGGAACCTATGATGGACCCTACAGCGTCTTCACAGGCAAAGACGACATCAACAAAGTTTCCACCATCGACTCCTGGAACCTTGAGAAgactCTGTCCTACTGGAACAATACGTACTGTGATATGATCAATGGCACAGaCGGCTCGTCCTTCTCTCCATTCCTGGACAAGAAGACGCCGTTGTACTTCTTCTCCTCAGACATCTGCAGGTCCGTCTCAGCCGAGTTCGATGCCAGTGTGGATTTGAAAGGGATCACAGTGTATCGCTACATGCTGCCATCACAGACCTTCGCCTCTCCCGTGGAGAATCCAGACAACCGGTGCTACTGCACAAACACCCAGACCACCAGGAACTGCACGCTGGCCGGCGTGCTCGACGTCGGAgcgtgtagaggtacTCCTGTGCTCATTTCCCTCCCTCATTTCCTCCATGGCAgtaaggagctgcaggaactcGTTCATGGTCTAAACCCGGACCCTGAGGAACACTCCACCTATCTGGACGTGGAACCGatcacAGGCTTCACACTGAGGTTTGCCAAACGCCTTCAGGTCAACATGATGTACGGCCCATCAAAGGACATCAAgATCCTTAATAAAGTGAAGGAGAACACCGTCTTCCCCATCCTGTGGTTAAATGAGacGGCGGCACTCGATGATGACACAGCACAGAGGATTAAGGCGGAGCTCTTCTCCCGGATCGACACTCTGGAGACGGTGCAGATCGCTCTGATATCAGCCGGAGCGGTGATGTTGGTGCTGTGTCtgattggagtgtgtgtggtgaaccACCGGAGTCGCTTATCGTTCATAGCGTAAAGCGTAACGTGTTTACACGCTAATCATTTCTGATTAACGTCAGGACTGTAGCAAACGCTCCAGCTCAGGAAACTACATGACGCTGAAGTACGGCAACACTAATGGGACAAATACTCAACTATACTACACCACTAGGGGGTGCTGGAGGGTCAGGACAAACTTTACGGAAAATTTGTACGTTAATGCAACACGTATACGCACTTGCTTTCAGTAaatactttacattttatttaaacacctATAAAGTAAAAACgcaaaaatttaatttttttcaaatttagcGAATTAGCCGAGACACGTTTAGTGTGTGAagtctttagttttgcactggagctaacAGGCTAATGGAGAacgtagctaacaagtaaggaaagctttatagctaccagtttaacGTTAATCAAActgaatcactttcttcctgAACACATAGAAGGGATAATaaaatttgataataaaatttcatttgtgtgtttaattctGCTATTGTACTATTAGGTTTAAATCTAATGTGTGtcagcgagtgtgtgatgatttagccGTGCAgcttgcacaatgctaaactggtggctataatCTTACATTTAGCTCCAGTGCGAAAGGAAAGAAGTGACATTTTGGATAAATAGTTCCTTTAATGCGGTATTTTTTATAGTATACGTTTATAGTACTTATTCAGTACTGTAACGAATTAATTCTTTTaagaataaatattataaaataagttttattCCAGTTTGCGACCAATAAAAggaagaatgtaaaaaaaaa

Function

GO:

id name namespace
GO:0034694 response to prostaglandin biological_process
GO:0033552 response to vitamin B3 biological_process
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06259 CD36; CD36 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327644 lncRNA downstream 2185 3968695 ~ 4042521 (-) True G276395
TU327627 lncRNA downstream 128589 3915328 ~ 3916117 (-) True G276388
TU327625 lncRNA downstream 130717 3913539 ~ 3913989 (-) True G276387
TU327626 lncRNA downstream 130717 3913539 ~ 3913989 (-) False G276387
TU327616 lncRNA downstream 139775 3901262 ~ 3904931 (-) False G276384
TU327671 lncRNA upstream 9934 4070448 ~ 4071037 (-) True G276420
TU327672 lncRNA upstream 9934 4070448 ~ 4142948 (-) False G276420
TU327676 lncRNA upstream 9934 4070448 ~ 4142948 (-) False G276420
TU327678 lncRNA upstream 9934 4070448 ~ 4142226 (-) False G276420
TU327710 lncRNA upstream 63951 4124465 ~ 4125581 (-) True G276447
XM_034313185.1 mRNA downstream 99405 3919302 ~ 3945301 (-) True kdm7aa
XM_034313181.1 mRNA downstream 138053 3857515 ~ 3906653 (-) True kmt2e
XM_034312987.1 mRNA downstream 233090 3798341 ~ 3811616 (-) True orc5
XM_034313225.1 mRNA downstream 261923 3760116 ~ 3782783 (-) True golgb1
XM_026909954.2 mRNA downstream 288849 3738884 ~ 3755857 (-) False hcls1
XM_026909919.2 mRNA upstream 270746 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA upstream 270746 4331260 ~ 4343545 (-) True LOC113523868
XM_026912198.2 mRNA upstream 723614 4784128 ~ 4792797 (-) True psmc2
XM_026922701.2 mRNA upstream 836756 4897270 ~ 4917780 (-) True gys2
XM_026922781.2 mRNA upstream 865202 4925716 ~ 4938813 (-) True ldhba
TU327549 other downstream 307629 3736130 ~ 3737077 (-) True G276340
XR_004580002.1 other downstream 472780 3565035 ~ 3571926 (-) True LOC117599595
TU327175 other downstream 505963 3536997 ~ 3538743 (-) True G276075
XR_004579995.1 other downstream 550690 3430190 ~ 3494016 (-) True lin7a
TU327062 other downstream 750916 3285837 ~ 3293790 (-) False ppp1r12a
TU327682 other upstream 21764 4082278 ~ 4091863 (-) True G276421
TU327840 other upstream 237346 4297860 ~ 4300524 (-) True G276530
LOC117599555 other upstream 297025 4357539 ~ 4457121 (-) True LOC117599555
LOC117599551 other upstream 300818 4361332 ~ 4361942 (-) True LOC117599551
LOC117599554 other upstream 325828 4386342 ~ 4387104 (-) True LOC117599554

Expression Profile