RNA id: XM_026912198.2


Basic Information

Item Value
RNA id XM_026912198.2
length 1544
RNA type mRNA
GC content 0.53
exon number 12
gene id psmc2
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4784128 ~ 4792797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGTGAACCGGAAGTGAAGCAGTACGCTAGCTAAAAACCTGCTGTGTAATCTTGCCTCCACAGCCACTGAAGAGaagcttaataaaaataaataaataaataaataaaaatgccgGATTATTTAGGAGCCGAGCAGCGCAAAATCAAAGAGGAGGATAAAGATGACGGGCCAATTCGagcTCTGGATGAAGGAGACATCGCTCTTCTAAAGACTTACGGCCAGAGCACGTATTCTCGTCAGATCAAGCAAGTAGAGGACGACATCCAGCAGCTCCTGAAGAAGATCAACGAGCTCACAGGCATTAAGGAGTCGGATACGGGGTTGGCTCCTCCTGCGCTATGGGACCTGGCTGCTGATAAACAGACGCTGCAGAGCGAACAGCCGCTGCAGGTGGCCAGGTGCACGAAGATAATCAACGCCGACTCGGAGGATCCGAAGTACATCATCAACGTGAAGCAGTTTGCCAAGTTCGTGGTGGATCTGAGCGATCAAGTCGCCCCGACCGACATCGAGGAAGGAATGAGAGTCGGCGTCGACAGAAACAAGTACCAGATCCACATTCCACTCCCTCCCAAAATCGACCCCACTGTGACCATGATGCAGGTGGAGGAGAAGCCAGACGTGACCTACAGCGATGTCGGAGGCTGTAAAGAGCAGATCGAGAAGCTCCGGGAAGTGGTGGAGACCCCTCTGCTGCATCCGGAGCGGTTCGTGAACCTGGGCATTGAGCCTCCAAAAGGCGTGCTGCTGTTCGGACCTCCGGGAACGGGGAAAACCCTGTGCGCTCGCGCCGTGGCCAATCGCACGGACGCCTGCTTCATCAGAGTCATCGGCTCTGAGCTGGTCCAGAAGTACGTGGGAGAGGGAGCTCGAATGGTTCGGGAGCTGTTCGAGATGGCCAGGACCAAGAAGGCTTGCCTCATCTTCTTCGATGAAATAGATGCTATTGGAGGAGCGCGTTTTGATGACGGAGCTGGAGGAGATAACGAGGTTCAGAGGACCATGCTGGAGCTCATCAACCAGCTGGACGGCTTCGACCCCAGAGGAAACATCAAGGTCCTGATGGCCACCAACCGACCCGACACTCTGGACCCGGCTCTCATGAGACCCGGTCGTCTGGACCGCAAGATCGAATTCAGCCTGCCTGACCTGGAGggtcGCACTCACATCTTCAAGATTCACGCTCGCTCCATGAGTGTAGAGAGAGACATTCGGTTCGAGCTGCTGGCCCGCCTCTGTCCCAACAGCACAGGCGCGGAGATCCGGAGCGTGTGCACGGAGGCGGGCATGTTCGCCATCAGAGCTCGCAGGAAAATCGCCACAGAGAAAGATTTCCTCGAAGCCGTGAACAAAGTCATCAAATCGTACGCCAAGTTCAGCGCCACCCCCCGATACATGACCTACAACTAAACCCCGCGTTCCCTTTCCCTTTCACGCTGTCCTTCTTTACAAGAGAAACAGTCAAGCTGTGTATTCATCATCGTttgattcttttcttttctttactgttataattaataaataaaaatgtaccaCCAGTA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03061 PSMC2, RPT1; 26S proteasome regulatory subunit T1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327871 lncRNA downstream 226871 4414459 ~ 4557257 (-) True G276557
TU327788 lncRNA downstream 229014 4399287 ~ 4555114 (-) False G276503
TU327891 lncRNA downstream 281266 4449882 ~ 4502862 (-) True G276570
TU327796 lncRNA downstream 301134 4429498 ~ 4482994 (-) False G276503
TU327896 lncRNA downstream 301563 4466273 ~ 4482565 (-) False LOC117599578
TU328119 lncRNA upstream 5862 4798659 ~ 4799157 (-) True G276749
TU328127 lncRNA upstream 9110 4801907 ~ 4844371 (-) True G276755
TU328136 lncRNA upstream 24311 4817108 ~ 4841754 (-) False G276761
TU328138 lncRNA upstream 24311 4817108 ~ 4876792 (-) False G276761
TU328142 lncRNA upstream 24311 4817108 ~ 4862107 (-) True G276761
XM_026909919.2 mRNA downstream 440583 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA downstream 440583 4331260 ~ 4343545 (-) True LOC113523868
XM_026909970.2 mRNA downstream 723614 4044706 ~ 4060514 (-) True cd36
XM_034313185.1 mRNA downstream 838827 3919302 ~ 3945301 (-) True kdm7aa
XM_034313181.1 mRNA downstream 877475 3857515 ~ 3906653 (-) True kmt2e
XM_026922701.2 mRNA upstream 104473 4897270 ~ 4917780 (-) True gys2
XM_026922781.2 mRNA upstream 132919 4925716 ~ 4938813 (-) True ldhba
XM_034313267.1 mRNA upstream 161494 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA upstream 161494 4954291 ~ 4965093 (-) True slc25a3a
XM_026923411.2 mRNA upstream 173435 4966232 ~ 4984301 (-) True tmpoa
TU327987 other downstream 45129 4734931 ~ 4738999 (-) True G276650
TU327795 other downstream 197032 4477767 ~ 4587096 (-) False G276503
TU327794 other downstream 197032 4500849 ~ 4587096 (-) False G276503
LOC117599580 other downstream 197136 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 207090 4576470 ~ 4577038 (-) True LOC117599581
XR_004579951.1 other upstream 175456 4968253 ~ 4984315 (-) False tmpoa
TU328176 other upstream 177517 4970314 ~ 4972245 (-) False tmpoa
TU329048 other upstream 1188341 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 1189495 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 1240232 6033029 ~ 6033193 (-) True LOC113532437

Expression Profile