RNA id: XM_026922562.2


Basic Information

Item Value
RNA id XM_026922562.2
length 6337
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC113531701
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7510088 ~ 7527943 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGCTTTAAATTCCAGCACCAGAAGCGACagtgtgcacgtgtgtgagtgtgtatccgtggtgagagtgtgtatggATCATACAAACTGGATTAAATATTAACCAACTGAGTGCTGGAGCTTTTGAAGGCATCTtCAGAACCTACCTCATCACTGAAGAACCAGGGGAGGCATCCTTCACAATGCAAGCGTACACTCAGATGCCACCTGTTGGACTTCGACTGCACACTTCACAGCAGACTTCCTGCAGTATGGTGCCTAGCCCTGAAGCGCAGGCACAATATTACATTGTAcaacaaaataatcaacagtctCATGGGTTATGTAACGGACAGACTTCCTCCCAGCCTGTTTCAAGTTCATCTAATTTGCAGTTGAGACAGATGCCTCAAGCGTGGTTTACCAACTCACAGAATCAGTTGCTTCTTGGAAATTCAGCTTGTATGAGAGCTACTTTACCAATTGAACAGTGTGCACCATTGCCAGCTGCTCAGCATGGGACCCCCACTCAAAACCTCAGCCATCATCCCCAAATCTTGATTAGAAATACTGTTCCTCAGCAGAATTATAATATGCCACGCTTGCACAATGTCAGTAGTACAACAACTGTTTTTTGGTTCCCTCCTGCTAATAGCAACACAAGTTCTGCAACTGAACAGAATAACCTGACACATCGGTCAGTTCCACCTCAGTATGAGACTTTGAATGGGCATCATAACAGAATGCAGATTGCCCATCAACCTCAATCTCAGACGCAAAAAACAGATCTGTTTGTTCAGATTCTGTCTAACCAGGCACCACAGAAAATTCACAATAATCAAGGTCAGAtaagaggaggaaaaagaaatggTGCTTTATATAGCTCTGTTAACCACTTCCCTGCTACATCACAAAGACTTATCACTCCATCCCAGCCTTCAAACTACAGTCATCAGACTGGTCAGAGCCACTTGAGCTATACCGGGAATCAGGTTCAATATTCATCACAAATCCAGCGTCAGCCTCCTCCATACAGAGCGGAGAACAATTCCGCCAGTTACAGTCATTTAAAACATAGTAGGAATAAGCACCAAAGTTTAATGTCAAACCTACCCCATCCCCCACTATACACAAGCCAGCCAATTCAGAGGATAAATCAAAGTTCAGCATTAAGTTTACCTAAGGACAGTATCCAGCCCCAGACTCCACTGCAGCAATGCAACACCATACCAGTTTCTGGCCATCACAGCAAGACATGCCAACCTGCTGTACCTGATATTCATGCCAAAACACAGCCACATGTCTTAAATAACACAATCACTGGGTTCCCTAGATCCTCCCAGGTTGCAATATCTTCTAGCACTCCTACCAGTGAAGCACCACCTCCCATCTATACAGAATCTACTCTCGACTACTCCCGGGTCACTCTAATGGATTTGCTGGTAAAGGACAACACACAAGTTCCTGCTCAAAGGCATGGCACTAATCCTCTATCTCATCTCAAGTGCAACTTTACCACACAGGGACAAACACCCAGCCACATTACCACTAAGGCAAGCTACTCTCAGACACCAGAATCTGCCCCATACTGTGGTGCTCCTGCAACCCTATACAGTAAAGAACTTCAAACAGTCAGCGAGTACCAGACACCTGTCAAAAGAACAGCCATCTTAAAAGAGAATGAGCATGCACTTGGTAATCAAGTGAAAACACCAGATGTTCAAAGCTTTGAAGGGATGCAGAGCAGAAGATTGCAAacagacttaaacactgagagaaAAGATGGACATAAGAGCAATAACAGACATGAAGAGGGGCAGTACAGTGAGGACATAACTAAATCTCTGGACCTGGTAATGGCACTACAGAAAGTGGTTCAACAATCCCACAAAGCAGTAGCTGTAGTTCCACCCATTTCTCAGCAGGCCCCCAGTCCAGAAAAGAAAGCTCATGTAATCACAAGCTCTAATGACAGCCTGCCCTTCAAGATAGATGCTGTCTGGACTCTCAAGGAGAGCAAGAATATGGAGCAAGAGTCAACTGCAATGAGTCTGCCCAAAGAAACCACTGAGGAATTACTGCAGTTGTTTTCAGTACCACACTCTGAGACACAGGAACGTAACAAACATGAAGATGGATCTACAGTTGACAGCCTAATACCCGACACTCAAAGCACTGATATTCCTCAGTCTAAAATTGGATCTACCACATCTCAAGGCCTTGTTTCCTCTACTGCCTTGATATCAAAAAGTCCAGAGGATCACAACAAAGTCAAGACTGGTAACTCAAATGGCAATATATTTGATTTGTCCCAGGTTCAAGTGCTTAATTTTACACTGGACAAATTTAATAACTTGGTGAAGGTTTTAGAAAGAATACTAGACAGAAGTGTAAAAGACCCAGTAGCAGATCTTGAGAAGTGTCTCCTAGATCTCTATTGGGATGGAAGCACAAAAAACAtagaaaaacaaatacacacattcactgcaGAGTGGTCTAGCCTCTCTTCTGAAGTGTCCATAAAAGAAATGCAGACAGCAGTGTTTCAATACCTTAAACCCAAAGACTTAAAGATGCTGGTACATGGTTAccacattttgaaaaatgacaCAAACTTACCAACTGAGGAATTTAGGTCCTCGTGGTTGAACATTGATGGACAGCCAGCTGATATAGAAAATGTTCTTGCAGAACCAATTTTGGATGTTAATCTTACTGATTATGCTTTATATGGAGGTTTCAACACTCTTAACATTTATTCAGAGTCTGAAACTTCTAAAAAGGTGATTCCTGCAACAACTGATTTCCAGAATGACAAGATGATTAACAAAGAGCTTGCAAACACGCAGGTATGTGAAAGTAAATCTACTGATAAAGTCTCCAAAGCACAGGAAGCATCAAAGAAGCAAGAAGATGAAAACCTTCAGAAACATCAGCAGCAAGATGTAAATTTGAATATTGAAGAATCTATAGACTCAAATGAAACAGCAGACACACTGATGGAGAGCAAAAGCAAAACAGAATGTGAACAAGTCTGCAGAGATACAAGTGAGGATATCACTTCTTCCACTGAAATTGTTGAGCAGATAGATCTTTCTAATGATGTCGATTCCAGCAACGACTCCCAATTAATCGAACTCTCACTTCTGTCATCTGATGATGCTAGAACAATTTTTAAGGAATACTCTGGTTGTGATTTGCAAATAGAGCCTTCTCAGTTGTGCCAAGATGAAACAAAGGTTTCAGCCACCCCAGAGAATGAGTCTAATGATTTCTGCAATACagccaatcaaatcaaattcacTTGCCCTCATGTGACTGACATCGACTGGGATGGTGAACATTTCTGCCCCAGGTGCTGGGAAGAGACACCTTTACTGGATCTAGACCTGGAAGAAGGTCTGTTCAGCCCAAAGGGGGGTAGTTCTAATATGAGAACTCCTCCTAAACAAGGTCATCATAATCAAAGCTGTACTCCACAATCTGGTAGACCAGACTCAAATTGTACTGTATTATCCGAGAGTAGCAGCATAGCTGACTCGTCAACTCCAAACGTTGATGTATTTGAAGTGAACATCTCAGAACCAGACCCTAATCCGAGTGATGCAGTAGAGAGTTGTAGCTCACAGTTTGGTAAATCACCAGTTAAAGAACCACATGCACCTGTGTGCACTGAAAGTGTTAGCTTCACTATGCCAATTGATAAACAAGTCTGTGAGTCTAAGAGTTTATTGGGACCAGAGTTACCCAAGGCTCTGTCTtgtgcacaaaacattgaaaacttggccattccagaacAGACCAAAACCCTAAGAGATGAAGTTTCTCCACCAAATAGTCCACCATGCAAAAAGTTAAAACTAACCAAAATTACAGAAATACCTGCAGAAGATGACCTTTTCACTGCTGATATTGTGACCAAAAAAGCTAGCTCCACAAAACCACTTCCAAGTGACCATAGTGTTACTCCAGCTGAAGATGGCCAGAATTGTAAAGATGAAGGAAAAAATAGAGTAGAAGAAAGTAAGTCTCCAATCAAGCTGAAAATTCAAATTAATACTCAGTGTCCACAATCTGGTAGACCAGACTCAAATTGTACTGTATTATTCAAGAGTAGCAGCATAGCTGACTCGTCAACTCCAAACGTTGATGTATTTGAAGTGAACATCTCAGAACCAGACCCTAATCCGAGTGATGCAGTAGAGAGTTGTAGCTCACAGTTTGGTAAATCACCAGTTAAAGAACCACATGCACCTGTATGCACTGAAAGTGTTAGCTTCACTATGCCAATTGATGAACAAGTCGGTGAGTCTAAGAGTTTATTGGGACCAGAGTTACCCAAGGCTCTGTCTtgtgcacaaaacattgaaaacttggccattccagaacAGACCAAAACCCTAAGAGATGAAGTTTCTCCACCAAATAGTCCACCATGCAAAAAGTTAAAACTAACCAAAATTACAGAAATACCTGCAGAAGATGACCTTTTCACTGCTGATATTGTGACCAAAAAAGCTAGCTCCACAAAACCACTTCCAAGTGACCATAGTGTTACTCCAGCTGAAGATGGCCAGAATTGTAAAGATGAAGGAAAAAATAGAGTAGAAGAAAGTAAGTCTCCAATCAAGCTGAAAATTCAAATTAATACTCAGTGTCCACAATCTGGTAGACCAGACCCAAACATGAATGTATGCTCAGAGAGTAGCAGCAACTCTTCAGATCATTCAGCCTATAGAGTTAATATGAGCGTCACAGAAACAGACCCTAATATAGGTGATTCAGTTCAGAGCTGTAGCTCACCGTCTGGTAAATCACCAGATAAAGAAGCGCATGGACGAGTATGCTCAGAGAGTGTTAGGGTCACCATGCCAATTGAAAAACAAGTTTGGGAGGCTAATAGTTTGTCGGGGGCAGAGTTACCCAAGGCTCTGTCTCTTACACAAAACATTGCAAAGAGTAAGCCAGTCATTCCATCACAGACCAAAACATCAAGAGGAAAAGTTTCTCCACCAAGATATACACTATGTAAAAAGATAAAGATTACCAAAACTACATTAATACCTGCGGAAGATGACCTTTTCACCCCTGATATTGTGATCAAAAAAGAGAGCTCCCCAAAACCACACCCAAGTGCCCTCAATTCTACTCCTACTGAAGATGGCCGGCATTGCACAGatgaagggaaagaaagaggagaagaaagaaagtctCCAAACATGTTGAAAACTCAATGTAATCAGCCTTCTGGCCAAACTAAAACAGATGCACATGGGAAATGGAAAAAGCTATCTGTTAAGTCTCAAGTGCCAAATGTTACACCTCAGCCGAAAAGACCAGCTGTGGCGGCAAATTCTGACACAAACAAAGAGAAGGTACTTGGTAAGACAAAACAAACTGGACAAAacaaaggaatgaaaaaaatgagatttgCATTGTATGGATTCAGTAATAGCAACCAGAGCAAAATTGTTCAGCACCAATGCTACAACAGGACAAAGTCAACCACAGCTCCTGCTTATGTTACAATTGCAAACAGCCCTGAAACTGCCCAGAGCTACACAGATGCACTTTCAGCTAAGCAAAAGGTCTATAGCCAGTGGAGTAGCACATTTgtggaaacaaaaaagaataccTCTTCACATAAGAAacatcaaaaacatgtgaaaaatgaactgaaatccAGGACAGAAGCACTCAAAAGACTTATTAAAGACAGATTAGCTATAAAAGATAAGCAAATCACAGATGGTACGAAGCATAAACAAAGCACAGATTTTGTTGTTGCACAAGAGTTGCCAAAAATTTGAAGTGTACCATTGCTGATGAAAACTTATAACCATTAGAACACAAAGTACACTGGTTCTTAAGTAGTATATTAGAAAATAAGCTTGTATTGTATGCTCCTTTGTGTCAAATAAGTCATTGCTTATAAACTCTTTTTGTGGTAAGTTGTAAAATCTGGTCTTATGACTAAGTTCAGTGCTGAATCCACACTCTggtaatttcttttctttcactagAAATTTCTGTGTCACTAGATGTGTGTCACATCTAATGTGTCAAGTGTCACTAGAAATTTCTAGTTAAAGAGAaggttctctttttttgttctctttccaATGCCAGTGGCATAACCTACTTGAAATGGTTGTTTCGTTTAACTGATAACGTACTGtgtattatcattttaattcacCACATTTTTAGTGGTTTTATGAAATGCTGAGATTTTATGCTCTATGAGCTGGGAGCTTGATCGCCATTGAGAactttttacctttttatatTGTTGAGATTTTACAACGTATTGTCTGTATATTTGTAAACACTTTTTCAATAAAGTTTGTATGAAAATA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0048285 organelle fission biological_process
GO:0007059 chromosome segregation biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0000280 nuclear division biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03040 Spliceosome
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329920 lncRNA downstream 13913 7495572 ~ 7496263 (-) True G278312
TU329881 lncRNA downstream 84261 7424842 ~ 7425915 (-) False camk1da
XR_004579863.1 lncRNA downstream 94105 7414348 ~ 7416071 (-) True LOC117599447
TU329874 lncRNA downstream 280736 7229005 ~ 7229440 (-) True G278275
TU329864 lncRNA downstream 435591 7071746 ~ 7074585 (-) True G278265
XR_004579997.1 lncRNA upstream 2841 7530784 ~ 7534282 (-) False LOC117599592
XR_004579998.1 lncRNA upstream 2841 7530784 ~ 7534281 (-) False LOC117599592
XR_004579996.1 lncRNA upstream 2841 7530784 ~ 7534281 (-) True LOC117599592
TU330151 lncRNA upstream 268892 7796835 ~ 7879017 (-) True G278520
TU330235 lncRNA upstream 438876 7966819 ~ 7967421 (-) False avpr1ab
XM_026922817.2 mRNA downstream 10097 7421988 ~ 7500079 (-) True camk1da
XM_026923502.2 mRNA downstream 106669 7391215 ~ 7403507 (-) True optn
XM_026923503.2 mRNA downstream 106673 7391643 ~ 7403503 (-) False optn
XM_026923455.2 mRNA downstream 219785 7249424 ~ 7290391 (-) False ninj2
XM_026923324.2 mRNA upstream 11981 7539924 ~ 7560116 (-) True ttll12
XM_034313356.1 mRNA upstream 32206 7560149 ~ 7592040 (-) True pnpla3
XM_034313355.1 mRNA upstream 33259 7561202 ~ 7592039 (-) False pnpla3
XM_034313354.1 mRNA upstream 33300 7561243 ~ 7578390 (-) False pnpla3
XM_026923325.2 mRNA upstream 33426 7561369 ~ 7578390 (-) False pnpla3
trnam-cau_46 other downstream 1407029 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 1476983 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 1518242 5981138 ~ 5991934 (-) False copg2
TU329042 other downstream 1525612 5982292 ~ 5984564 (-) True G277575
TU328176 other downstream 2537931 4970314 ~ 4972245 (-) False tmpoa
trnal-aag_11 other upstream 65784 7593727 ~ 7593808 (-) True trnal-aag_11
TU330291 other upstream 525145 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 690618 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 1281277 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1679408 9207351 ~ 9208563 (-) True G279415

Expression Profile