RNA id: XM_034313286.1


Basic Information

Item Value
RNA id XM_034313286.1
length 5834
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC113531701
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7510088 ~ 7527943 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGCTTTAAATTCCAGCACCAGAAGCGACagtgtgcacgtgtgtgagtgtgtatccgtggtgagagtgtgtatggATCATACAAACTGGATTAAATATTAACCAACTGAGTGCTGGAGCTTTTGAAGGCATCTtCAGAACCTACCTCATCACTGAAGAACCAGGGGAGGCATCCTTCACAATGCAAGCGTACACTCAGATGCCACCTGTTGGACTTCGACTGCACACTTCACAGCAGACTTCCTGCAGTATGGTGCCTAGCCCTGAAGCGCAGGCACAATATTACATTGTAcaacaaaataatcaacagtctCATGGGTTATGTAACGGACAGACTTCCTCCCAGCCTGTTTCAAGTTCATCTAATTTGCAGTTGAGACAGATGCCTCAAGCGTGGTTTACCAACTCACAGAATCAGTTGCTTCTTGGAAATTCAGCTTGTATGAGAGCTACTTTACCAATTGAACAGTGTGCACCATTGCCAGCTGCTCAGCATGGGACCCCCACTCAAAACCTCAGCCATCATCCCCAAATCTTGATTAGAAATACTGTTCCTCAGCAGAATTATAATATGCCACGCTTGCACAATGTCAGTAGTACAACAACTGTTTTTTGGTTCCCTCCTGCTAATAGCAACACAAGTTCTGCAACTGAACAGAATAACCTGACACATCGGTCAGTTCCACCTCAGTATGAGACTTTGAATGGGCATCATAACAGAATGCAGATTGCCCATCAACCTCAATCTCAGACGCAAAAAACAGATCTGTTTGTTCAGATTCTGTCTAACCAGGCACCACAGAAAATTCACAATAATCAAGGTCAGAtaagaggaggaaaaagaaatggTGCTTTATATAGCTCTGTTAACCACTTCCCTGCTACATCACAAAGACTTATCACTCCATCCCAGCCTTCAAACTACAGTCATCAGACTGGTCAGAGCCACTTGAGCTATACCGGGAATCAGGTTCAATATTCATCACAAATCCAGCGTCAGCCTCCTCCATACAGAGCGGAGAACAATTCCGCCAGTTACAGTCATTTAAAACATAGTAGGAATAAGCACCAAAGTTTAATGTCAAACCTACCCCATCCCCCACTATACACAAGCCAGCCAATTCAGAGGATAAATCAAAGTTCAGCATTAAGTTTACCTAAGGACAGTATCCAGCCCCAGACTCCACTGCAGCAATGCAACACCATACCAGTTTCTGGCCATCACAGCAAGACATGCCAACCTGCTGTACCTGATATTCATGCCAAAACACAGCCACATGTCTTAAATAACACAATCACTGGGTTCCCTAGATCCTCCCAGGTTGCAATATCTTCTAGCACTCCTACCAGTGAAGCACCACCTCCCATCTATACAGAATCTACTCTCGACTACTCCCGGGTCACTCTAATGGATTTGCTGGTAAAGGACAACACACAAGTTCCTGCTCAAAGGCATGGCACTAATCCTCTATCTCATCTCAAGTGCAACTTTACCACACAGGGACAAACACCCAGCCACATTACCACTAAGGCAAGCTACTCTCAGACACCAGAATCTGCCCCATACTGTGGTGCTCCTGCAACCCTATACAGTAAAGAACTTCAAACAGTCAGCGAGTACCAGACACCTGTCAAAAGAACAGCCATCTTAAAAGAGAATGAGCATGCACTTGGTAATCAAGTGAAAACACCAGATGTTCAAAGCTTTGAAGGGATGCAGAGCAGAAGATTGCAAacagacttaaacactgagagaaAAGATGGACATAAGAGCAATAACAGACATGAAGAGGGGCAGTACAGTGAGGACATAACTAAATCTCTGGACCTGGTAATGGCACTACAGAAAGTGGTTCAACAATCCCACAAAGCAGTAGCTGTAGTTCCACCCATTTCTCAGCAGGCCCCCAGTCCAGAAAAGAAAGCTCATGTAATCACAAGCTCTAATGACAGCCTGCCCTTCAAGATAGATGCTGTCTGGACTCTCAAGGAGAGCAAGAATATGGAGCAAGAGTCAACTGCAATGAGTCTGCCCAAAGAAACCACTGAGGAATTACTGCAGTTGTTTTCAGTACCACACTCTGAGACACAGGAACGTAACAAACATGAAGATGGATCTACAGTTGACAGCCTAATACCCGACACTCAAAGCACTGATATTCCTCAGTCTAAAATTGGATCTACCACATCTCAAGGCCTTGTTTCCTCTACTGCCTTGATATCAAAAAGTCCAGAGGATCACAACAAAGTCAAGACTGGTAACTCAAATGGCAATATATTTGATTTGTCCCAGGTTCAAGTGCTTAATTTTACACTGGACAAATTTAATAACTTGGTGAAGGTTTTAGAAAGAATACTAGACAGAAGTGTAAAAGACCCAGTAGCAGATCTTGAGAAGTGTCTCCTAGATCTCTATTGGGATGGAAGCACAAAAAACAtagaaaaacaaatacacacattcactgcaGAGTGGTCTAGCCTCTCTTCTGAAGTGTCCATAAAAGAAATGCAGACAGCAGTGTTTCAATACCTTAAACCCAAAGACTTAAAGATGCTGGTACATGGTTAccacattttgaaaaatgacaCAAACTTACCAACTGAGGAATTTAGGTCCTCGTGGTTGAACATTGATGGACAGCCAGCTGATATAGAAAATGTTCTTGCAGAACCAATTTTGGATGTTAATCTTACTGATTATGCTTTATATGGAGGTTTCAACACTCTTAACATTTATTCAGAGTCTGAAACTTCTAAAAAGGTGATTCCTGCAACAACTGATTTCCAGAATGACAAGATGATTAACAAAGAGCTTGCAAACACGCAGGTATGTGAAAGTAAATCTACTGATAAAGTCTCCAAAGCACAGGAAGCATCAAAGAAGCAAGAAGATGAAAACCTTCAGAAACATCAGCAGCAAGATGTAAATTTGAATATTGAAGAATCTATAGACTCAAATGAAACAGCAGACACACTGATGGAGAGCAAAAGCAAAACAGAATGTGAACAAGTCTGCAGAGATACAAGTGAGGATATCACTTCTTCCACTGAAATTGTTGAGCAGATAGATCTTTCTAATGATGTCGATTCCAGCAACGACTCCCAATTAATCGAACTCTCACTTCTGTCATCTGATGATGCTAGAACAATTTTTAAGGAATACTCTGGTTGTGATTTGCAAATAGAGCCTTCTCAGTTGTGCCAAGATGAAACAAAGGTTTCAGCCACCCCAGAGAATGAGTCTAATGATTTCTGCAATACagccaatcaaatcaaattcacTTGCCCTCATGTGACTGACATCGACTGGGATGGTGAACATTTCTGCCCCAGGTGCTGGGAAGAGACACCTTTACTGGATCTAGACCTGGAAGAAGGTCTGTTCAGCCCAAAGGGGGGTAGTTCTAATATGAGAACTCCTCCTAAACAAGGTCATCATAATCAAAGCTGTACTCCACAATCTGGTAGACCAGACTCAAATTGTACTGTATTATCCGAGAGTAGCAGCATAGCTGACTCGTCAACTCCAAACGTTGATGTATTTGAAGTGAACATCTCAGAACCAGACCCTAATCCGAGTGATGCAGTAGAGAGTTGTAGCTCACAGTTTGGTAAATCACCAGTTAAAGAACCACATGCACCTGTGTGCACTGAAAGTGTTAGCTTCACTATGCCAATTGATAAACAAGTCTGTGAGTCTAAGAGTTTATTGGGACCAGAGTTACCCAAGGCTCTGTCTtgtgcacaaaacattgaaaacttggccattccagaacAGACCAAAACCCTAAGAGATGAAGTTTCTCCACCAAATAGTCCACCATGCAAAAAGTTAAAACTAACCAAAATTACAGAAATACCTGCAGAAGATGACCTTTTCACTGCTGATATTGTGACCAAAAAAGCTAGCTCCACAAAACCACTTCCAAGTGACCATAGTGTTACTCCAGCTGAAGATGGCCAGAATTGTAAAGATGAAGGAAAAAATAGAGTAGAAGAAAGTAAGTCTCCAATCAAGCTGAAAATTCAAATTAATACTCAGTGTCCACAATCTGGTAGACCAGACCCAAACATGAATGTATGCTCAGAGAGTAGCAGCAACTCTTCAGATCATTCAGCCTATAGAGTTAATATGAGCGTCACAGAAACAGACCCTAATATAGGTGATTCAGTTCAGAGCTGTAGCTCACCGTCTGGTAAATCACCAGATAAAGAAGCGCATGGACGAGTATGCTCAGAGAGTGTTAGGGTCACCATGCCAATTGAAAAACAAGTTTGGGAGGCTAATAGTTTGTCGGGGGCAGAGTTACCCAAGGCTCTGTCTCTTACACAAAACATTGCAAAGAGTAAGCCAGTCATTCCATCACAGACCAAAACATCAAGAGGAAAAGTTTCTCCACCAAGATATACACTATGTAAAAAGATAAAGATTACCAAAACTACATTAATACCTGCGGAAGATGACCTTTTCACCCCTGATATTGTGATCAAAAAAGAGAGCTCCCCAAAACCACACCCAAGTGCCCTCAATTCTACTCCTACTGAAGATGGCCGGCATTGCACAGatgaagggaaagaaagaggagaagaaagaaagtctCCAAACATGTTGAAAACTCAATGTAATCAGCCTTCTGGCCAAACTAAAACAGATGCACATGGGAAATGGAAAAAGCTATCTGTTAAGTCTCAAGTGCCAAATGTTACACCTCAGCCGAAAAGACCAGCTGTGGCGGCAAATTCTGACACAAACAAAGAGAAGGTACTTGGTAAGACAAAACAAACTGGACAAAacaaaggaatgaaaaaaatgagatttgCATTGTATGGATTCAGTAATAGCAACCAGAGCAAAATTGTTCAGCACCAATGCTACAACAGGACAAAGTCAACCACAGCTCCTGCTTATGTTACAATTGCAAACAGCCCTGAAACTGCCCAGAGCTACACAGATGCACTTTCAGCTAAGCAAAAGGTCTATAGCCAGTGGAGTAGCACATTTgtggaaacaaaaaagaataccTCTTCACATAAGAAacatcaaaaacatgtgaaaaatgaactgaaatccAGGACAGAAGCACTCAAAAGACTTATTAAAGACAGATTAGCTATAAAAGATAAGCAAATCACAGATGGTACGAAGCATAAACAAAGCACAGATTTTGTTGTTGCACAAGAGTTGCCAAAAATTTGAAGTGTACCATTGCTGATGAAAACTTATAACCATTAGAACACAAAGTACACTGGTTCTTAAGTAGTATATTAGAAAATAAGCTTGTATTGTATGCTCCTTTGTGTCAAATAAGTCATTGCTTATAAACTCTTTTTGTGGTAAGTTGTAAAATCTGGTCTTATGACTAAGTTCAGTGCTGAATCCACACTCTggtaatttcttttctttcactagAAATTTCTGTGTCACTAGATGTGTGTCACATCTAATGTGTCAAGTGTCACTAGAAATTTCTAGTTAAAGAGAaggttctctttttttgttctctttccaATGCCAGTGGCATAACCTACTTGAAATGGTTGTTTCGTTTAACTGATAACGTACTGtgtattatcattttaattcacCACATTTTTAGTGGTTTTATGAAATGCTGAGATTTTATGCTCTATGAGCTGGGAGCTTGATCGCCATTGAGAactttttacctttttatatTGTTGAGATTTTACAACGTATTGTCTGTATATTTGTAAACACTTTTTCAATAAAGTTTGTATGAAAATATTGTTGTAATGTTATTGGAAATATTAGTTATGACAAACAATACTCTTCAACTGTTTGAACAAATTATGAACACAGAGGATTGCTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329920 lncRNA downstream 13825 7495572 ~ 7496263 (-) True G278312
TU329881 lncRNA downstream 84173 7424842 ~ 7425915 (-) False camk1da
XR_004579863.1 lncRNA downstream 94017 7414348 ~ 7416071 (-) True LOC117599447
TU329874 lncRNA downstream 280648 7229005 ~ 7229440 (-) True G278275
TU329864 lncRNA downstream 435503 7071746 ~ 7074585 (-) True G278265
XR_004579997.1 lncRNA upstream 2841 7530784 ~ 7534282 (-) False LOC117599592
XR_004579998.1 lncRNA upstream 2841 7530784 ~ 7534281 (-) False LOC117599592
XR_004579996.1 lncRNA upstream 2841 7530784 ~ 7534281 (-) True LOC117599592
TU330151 lncRNA upstream 268892 7796835 ~ 7879017 (-) True G278520
TU330235 lncRNA upstream 438876 7966819 ~ 7967421 (-) False avpr1ab
XM_026922817.2 mRNA downstream 10009 7421988 ~ 7500079 (-) True camk1da
XM_026923502.2 mRNA downstream 106581 7391215 ~ 7403507 (-) True optn
XM_026923503.2 mRNA downstream 106585 7391643 ~ 7403503 (-) False optn
XM_026923455.2 mRNA downstream 219697 7249424 ~ 7290391 (-) False ninj2
XM_026923454.2 mRNA downstream 223128 7249424 ~ 7286960 (-) False ninj2
XM_026923324.2 mRNA upstream 11981 7539924 ~ 7560116 (-) True ttll12
XM_034313356.1 mRNA upstream 32206 7560149 ~ 7592040 (-) True pnpla3
XM_034313355.1 mRNA upstream 33259 7561202 ~ 7592039 (-) False pnpla3
XM_034313354.1 mRNA upstream 33300 7561243 ~ 7578390 (-) False pnpla3
XM_026923325.2 mRNA upstream 33426 7561369 ~ 7578390 (-) False pnpla3
trnam-cau_46 other downstream 1406941 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 1476895 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 1518154 5981138 ~ 5991934 (-) False copg2
TU329042 other downstream 1525524 5982292 ~ 5984564 (-) True G277575
TU328176 other downstream 2537843 4970314 ~ 4972245 (-) False tmpoa
trnal-aag_11 other upstream 65784 7593727 ~ 7593808 (-) True trnal-aag_11
TU330291 other upstream 525145 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 690618 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 1281277 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1679408 9207351 ~ 9208563 (-) True G279415

Expression Profile