RNA id: XM_026922568.2


Basic Information

Item Value
RNA id XM_026922568.2
length 2141
RNA type mRNA
GC content 0.47
exon number 3
gene id lmod2b
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10447665 ~ 10450902 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTTGCGTATCTATCTGGTTGACTCCCCTCTCCGAAAAtagctgctgcatcacagaCCAGGGCTTTGTCATGTACCCCTCTGATCAAGTTCTTAAAGCTCCTCTATCTGCTCCAGCAGTACCTCCTGATATCAGTCACCCTCAATCTCGTGATCGTTAACACTACAATCTCAACTGAAAGGACAGGTTTACACTGTGGTCTTTACCTCACAAAAGGCCATGAGTTCCTTTGGCTATCGCCGGGAGCTGAGCAAGTACGAGGAGTTGGATGAGGATGAGCTGCTTGCCTCACTGACAGCCGAAGAGCTCCAGGAACTGGAAAAGGAGCTGGCTGATATTGATCCAGATGATAAAGTCCCCACTGGACTAAGGCAGAGGGACCAGACAGATAAAACCCCCACGGGCACATTTAGCCGAGAGGCTCTCCTAAAATACTGGGAGAAAGAGACACGCCAGATTCTCGAAAATGAAAGGATGGGATCTTCAAGCCCCCAGTTTTGCTGTGGATTCCAGGGtggtgaaaataatgaaaaagagaaTATGACAGAAAGCAATAGCGAGGACtcagaagaggagaaagaatCTGAGGATGAGAAGGAAAAGGATGGTTGtatagatgatgatgaagaagataATGAAGAGAAGGGTGAACTAGAGGAGCCAATtactgaggaggaggaagaggaggaggaggaggaggaagaagaagaagaggaggaggaggaagaagaagaggaggaggaggaagaagaagaagaagaaaaagagattgTCAGAAAGCAGGAAAACAACCTCCAAAAGGAGAGTGTTCTGGAGAAATGTGTTCCTCTGCATAACATGTACAACGGTCACTCAAGCCTCAAGCCAGAAAATTCTGTGAGGAGAAATTCACCACAGGAGTCAAATCAGTTGTCAGGAAACCCCACTGTCCTAGATGAGGCTCTGGAAAAGATCCTCCGTGATGACCCTGACACCATTGAAGTCAATCTCAACAATATTGATAACATTTCCCAGGAAAACTTGATCCGCTTCACAGAAGCCCTGCACTCCAACACCCATGTGCAGGCTTTTAGTTTGGCGAACACTCATGCTGATGACCCAGTAGCCTTTGCAATTGCCAAAATGCTGAAGGAGAACTGCCACATTACTAAGCTAAATATTGAGTCTAACTACATCACAGGAAAGGGTATCCTAGCAATAGTGCAAGTACTTACACACAATAGCACTCTAACAGAGCTACGCTTCCACAACCAGCGCCATATCTGCGGAGGTCAGGTAGAGATGGAGATGGTAAAACTGTTGAGAGAGAACACCACCCTGCTCAAGCTTGGCTACCAGTTTGACCTGCCTGGCCCTCGAATGAGCATGACTGGCATCCTCACACGCAATCAGGATCTTCAAAGGCAGAAGAGAATGCAAGAACTACGTCAGCAGCAAGGAGGTGCCTCAACTCCAATTAACCCACGCACAAGTGCGCTACAGAAGAGCACACCAACAGCTTCTCCATATGGGTCTCCTCGGAGTTCACCGTGGTCCTCTCCAAAGCTGCCACGTAATGATGTCATAAAAAGGAATCCTCAACCAAGTCttccaccacctcctcctcctcctccaccacctccaccacctcctcctcctccacctccacctcccccCAAACCCCAGAGCATTACTGTAAAAAGAGGTCCAACCAGAAAGATCGCAGAGGTGATCAAACTTCAAGAAGCAAGTGCCAAAAAGCAACAGGTTCAGAGTAAAGGCAAGTGTAAGTCcaaaaaagggaagaaagagGTTCCCAAGGAAAACGGGACCGAAAACATCCTTAAGGAGCTGAAAAATGCACTGAAGCCCATCGCAGACAGAGACATCTCCAGACCCTCTACGCCAATGCGGTCGGCTCATGACGAACTCATGGCCGCTATCCGAGCAAGCAGTATCAAATCCCTGAAACGGGTGGAAGTTCCCCAGTATCTTCGGTAATGGGGTCAAATACTATGTaccaagaaagaaaggatggcCACACACATCATCTCCAAAGATCCTTTCCATAGCACTATGTTTATACGAAATACTCTGTAAAGAATCTGCATAGTTAGTGCAAACTTGTTCACTTCATGTTATGAATACCTTCCTACTGAAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K22030 LMOD; leiomodin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332306 lncRNA downstream 11819 10430631 ~ 10435846 (-) True G280389
XR_004579870.1 lncRNA downstream 151467 10255972 ~ 10296198 (-) True LOC113532274
TU332242 lncRNA downstream 151544 10295004 ~ 10296121 (-) False LOC113532274
TU332122 lncRNA downstream 359545 10087849 ~ 10088120 (-) True G280233
TU332117 lncRNA downstream 369309 10078086 ~ 10078356 (-) True G280228
TU332320 lncRNA upstream 13059 10463954 ~ 10465630 (-) True G280398
TU332265 lncRNA upstream 17791 10468686 ~ 10470375 (-) True G280360
TU332463 lncRNA upstream 325868 10776763 ~ 10777897 (-) True G280527
TU332558 lncRNA upstream 332466 10783361 ~ 10784293 (-) True G280615
TU332595 lncRNA upstream 455278 10906173 ~ 10908630 (-) True G280640
XM_026922867.2 mRNA downstream 431875 10007198 ~ 10015790 (-) True pik3cg
XM_026922868.2 mRNA downstream 431876 10007198 ~ 10015789 (-) False pik3cg
XM_026923293.2 mRNA downstream 549713 9895085 ~ 9897952 (-) True ccdc59
XM_026923840.2 mRNA downstream 555279 9878481 ~ 9892386 (-) True cracr2ab
XM_034313381.1 mRNA upstream 683 10451578 ~ 10461046 (-) True asb15b
XM_034313222.1 mRNA upstream 19641 10470536 ~ 10512149 (-) False ptprz1b
XM_026923202.2 mRNA upstream 19641 10470536 ~ 10512148 (-) False ptprz1b
XM_026923203.2 mRNA upstream 19641 10470536 ~ 10512148 (-) False ptprz1b
XM_026923201.2 mRNA upstream 19641 10470536 ~ 10512147 (-) True ptprz1b
TU332243 other downstream 151544 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 825046 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1239102 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1638327 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2227985 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 544210 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 788040 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1135409 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1206995 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 2130028 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile