RNA id: XM_026922634.2


Basic Information

Item Value
RNA id XM_026922634.2
length 2717
RNA type mRNA
GC content 0.49
exon number 17
gene id dmtf1
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8322995 ~ 8334489 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGTCGTTTCCGGTTTGTGAAAAGAGGctccttttttcctccatcCTGGTATTTGGCTCATCCTGGTCCCTGCGAAGTGCCCGGACCCAAAACAGGAAGCTGAGCATGAATGCAGGAGATGTCTCAGGTTCTGTGGCTTTGGACTCCGTCAGTTCTGTCACTTTCACACAAGACACCGACGGTACCATCATCCTGCACTGCGCTCAGAacgATGACGGGCCGATGGGATCGGACGAGGAACCCGAACCCATTCATAAACGATTACGCTTGTCCAGTGAGGAGACAGATGACCCCGCCTCCACGCCGTCTGCTTACTCGGTGGTTGCACTTCCACtttcagagcGCGAGGAGAGCTTTGAGGTGACGATGACGGCTACAGAAATGAAAGACGGGCTGGATCAGGAGAGCAGCAATCAATCAAAGGATGAGAAGTTGTCATCCTCACGGAAAACCACTGACGTGACGGCAGTCAGCCAAGCCTGGTTTACGACAAAAGAGGACAAGAACACGTTAGTGAACAAAgGTCACAAGTGGAAACAGGGGATGTGGTCGAAGGAGGAGATTGATATATTAATGAGCAACATTGAAAACTACCTCAAGAACCGGGGGATTCAGGACCCTTCAGAGATCATCTTTGACATGTCAAAAGAAGAGCGAAAGGATTTTTATCGTAGCATTGCGTGGGGTTTGAATCGTCCCCTGTTCGCAGTTTACAGACGTGTGTTGCGCATGTATGACAATCGCAACCATGTTGGCAAATACACGCAAGAGgaaattgaaaaattaaaagaGCTCAGGCAGAAGCATGGAAACGACTGGGCCACCATCGGGGCAGCTCTCGGACGCAGTGCCTCGTCAGTGAAGGACCGCTGCAGACTCATGAAGGACACGTGCCATACAGGTAAATggacagaggaagaagagaggaggCTGACAGAGGTGGTGCATGAGCTGACGGGTACAGAAGCTGGTGATGTGGTGACTCAGGGCGTTTCGTGGGCATCAGTGGCTGATCTGGTTGGCACACGCTCAGAGAAACAGTGCCGCTCCAAATGGCTCAACTACCTGAACTGGAAGCAGAGTGGAGGCACAGAGTGGACCAAAGAGGACGATATCAACCTCAtccgcaggataatTGAGCTGGCGGCGGAAGATGAGAACGAAATAAACTGGGATATTTTGGCTGAGGGATGGAGCAGCGTTCGCTCTCCTCAGTGGCTCCGGAGCAAATGGTGGACCATTAAAAGACAAGTGGCCAATCACAAAGACCTTCCGTTTCCTgtctTGCTAAAAGGACTGCAAGATGTTGTGGAAGCTCCCTCATCCACAGTGAATAAAGTCGTGGTGGTGGGCTCGCGCTCCGTTCACTCCTCATCCAGCCCTGTCACTGCGTTACAGATCCCTGTCCAAATCCCTGTACAGATCACACACGTCTCTTCTACAGACAATACGAGTGGGAGCTCTGAAAGCGGGACGATTACACTGAACTCTGGAGCGCTGCAGACGTTTGAACTTCTGCCATCCTTCCACCTGCAGCCCACCGGCACCCCTGGTACCTATTTCCTCCAGACGGGGTCCAATCAGAGCCTGCCGCTCACACTCTCTGCCAATTCCACCGTTACGCTCACAGCTGCAGGATCACCCGGCTCACCAGAGCAGATTATCTTACACAGCCTCGGCGGAGACAGCCTGAGCGACAATGTTACGGTGCAAATGTCTCATCCTGGGATCATAATCCAGACGGTGACATCAGAAGACCTTCCCGACCCTCttaaccaatcagagttgaCGTCAGAGCAGGATTTGGTCAATGAGGAGGCTGCTGAGGGGCCGGAGTGCTCGAAGGAAGGGGACGAGTCGAGTGAGCAGAGCTCTAAAGTCATGCAAGAGGACTCAACAGATAAGAGTTCGAAATTAAAGGAGGAGGTGGTGAACAGTGGGATTGGTGACGGAGCGGTGCTAATCGTTCCATCACCAGGCAGCTTCATCCCGACCAGTGACATCACCACTGACTCCGTCCTTCCCGTCGGTACACTGACAGATCCCATTCTGCAGAACCAAGAGGAAGGCTCAGACTGATGAGCACCTGTATGGGACCATCATGAAACCGTGCTGTCAATTTTGTGCATCTAATGCAAGAGAACGTTGGGGGTTTGTGGGTGAACACGCCACCGTTCTCAATACATCCTGCTGTAGAGGACAAGTATTATTGTGAAGGCCGCGTGGTGTAAGCTCGGAGAGTCAGAAACGTGTGCGTAATGTTTCCTACACTTTGCCAAACTGGTCATTAGATTTAACAGACTAGTATGAACACACTGAGCCAGTCGTCACGAGGAAGAAtcacagggagaacacacacacatacatacacacacaatgtttacTTCTATGAATCTGTATAATGTCTGAATATTTGTAGATCTGTACACGTAATGCAATTATGGACAAGGTGCATTcatagaacttttttttatggtccactgaaaagaaaagcattacACTGAAATATGACTATTTTAATGGACATCTGAGTACTGCTCTGTCATTCACATTTTatgaaatttgcactgtttCAATGTTCGGTTATGATAGTGTATTAGCCAAACACCAAGTGTCCACTTGTCTGGACAGATGTTAATTTATCAAAGGGTTACATTTTCTATGTGAGTGTATGgtcttgtgtttatttattgaataaacaaaatgttattCACCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330657 lncRNA downstream 83319 8238974 ~ 8239676 (-) True G278920
TU330636 lncRNA downstream 105702 8217013 ~ 8217293 (-) True G278911
TU330235 lncRNA downstream 355574 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 443978 7796835 ~ 7879017 (-) True G278520
XR_004579996.1 lncRNA downstream 788714 7530784 ~ 7534281 (-) True LOC117599592
TU330707 lncRNA upstream 55009 8389498 ~ 8390559 (-) True G278963
TU330836 lncRNA upstream 277629 8612118 ~ 8612342 (-) True G279064
XR_004579873.1 lncRNA upstream 363941 8698430 ~ 8698791 (-) True LOC117599455
TU331172 lncRNA upstream 859127 9193616 ~ 9194003 (-) True G279382
TU331392 lncRNA upstream 1001847 9336336 ~ 9337530 (-) True G279588
XM_026922676.2 mRNA downstream 11326 8301479 ~ 8311669 (-) True dclre1c
XM_026922672.2 mRNA downstream 32322 8283796 ~ 8290673 (-) True cdnf
XM_026923513.2 mRNA downstream 46121 8253483 ~ 8276874 (-) False shank3b
XM_026923514.2 mRNA downstream 46121 8253485 ~ 8276874 (-) False shank3b
XM_026923516.2 mRNA downstream 46122 8250112 ~ 8276873 (-) False shank3b
XM_026923666.2 mRNA upstream 23821 8358310 ~ 8388357 (-) False tspan9b
XM_026923665.2 mRNA upstream 23821 8358310 ~ 8372506 (-) True tspan9b
XM_034313192.1 mRNA upstream 56189 8390678 ~ 8426367 (-) True mical3b
XM_034313193.1 mRNA upstream 56190 8390679 ~ 8426358 (-) False mical3b
XM_026922835.2 mRNA upstream 56191 8390680 ~ 8426356 (-) False mical3b
TU330637 other downstream 103315 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 254918 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 729187 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2219848 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2289802 6033029 ~ 6033193 (-) True LOC113532437
XR_003403340.2 other upstream 474731 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 872862 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1288044 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 1935268 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 2660616 10995105 ~ 11007143 (-) True si:ch211-51e12.7

Expression Profile