RNA id: XM_026922642.2


Basic Information

Item Value
RNA id XM_026922642.2
length 2098
RNA type mRNA
GC content 0.52
exon number 2
gene id ckap4
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17591120 ~ 17594317 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acccggcgTGTGTGCCACGGCTGCAGTAGCGGCCACGACGCGCTCAGTGATACGCTGCATCCACTCCACATAGACTCAGTGTAACAAACCCCACACAACACTGTGGAGTGCAGAGCAAACCGAACAAGCCATGCCTTCCAAGAACAAAAACAAGGGCGCAAACTCCACCGACAAAGCCGCTGTTAACCCTCAGGATGACGCGGCGAAGAAGAGCCCCAAAGTCAGCAAAGCAGACAGTTCTGCCAACTCCAGACCAGGCTCAGGAAAGCTCACCAAGCTCCTGTCTGCCCTGTCCTACATGGTTTTAGTGTCCGGAGCTGCTTTCGCCTCCTTCTACCTGCAGAGAGTGCTGACTGAAGTGAACCAGATCCGCTCAGAAAGTGAAGAAGCCCTGCAGAAAAACGCCGAGGTGCTGCACAGAGTAGAACATGCACTCCAACAGGTGAATTCTATGAAGTTTTCTCTGGAGGGTCTGGAGGCTGCAGTGGGCCGTACCCAGGCTGAACTGGAAAGCGCTAATCGAGCCATAATAaagggagaaacagagacacGAAGGGTTGAGGAAGTGCTCCAGAAACTCCAGAACGAAATCCTTCGCGACCTCTCTGAGGGTATCCGGGAAGTGAAACAGGCACGTGAGCATGATTTCTCTTCCCTGGAGAAAACCCTGGAGGTGCGCCTGGCTGAGCTGAGCCGCTCTATCGCTGACAGCGTAGCCGAGTTCACTGGAGCTCAAGAAGAAGCTCAAGCGCAGCTCAGTGACCTCAGAATCCGGCTGGAAGAGCAGAATGAGCCTGGTAATCTAAAAAATGAGCTTATGGCAATCACCACTGCTGTAGCTGGCCTCCACACTGCAAACGAGGTGGCAGAGGGCAACATAGGTGTTCTCAGGGAACAGATTGTGTCAGTCAATTCAGAGCTGCAGACGAGGAACAAGGAGGTGGCATCCTTGTCTGAGGAACTTGAGGCAGTCAGGTCTCTAGTGCAGACCACTGCTGGCTCATTGAGGCAGGAAGTATCTGCGTCACAGGCCATCGTACAGGCCATGTCTGACCAGATCCAGAATGCGCAGGATGAGCAGCTTCGCACCAGCCAAGCCCTGCAGAGCCTCCAGATAGACCTGATGGGAGAACTATCTAAGAGAGAGACAAGGGAAGACGATCTGGAAGCCAGGCTGAAGATCACAGAAGAAAGTATAGACACGATTGCAAACTTGGCCACAGAGCAGGCGAGCCGAGTCGAGGCTTTTCTCTCCAAACATGACTCTCATGAGAGCTCATTAGCCGCCCAGAGCCAGGTGGCTGAGAAGGCAAGGCAGGCACTCAAGGAAGAGCTGGAGGAATTAAGAGGTAGCCTTGGGGAGCTCCAGGCCAGTATAGATGCTTTGGCTGACACTAATACCAGGTTAGAAGGAGTGGCTTTGGAAGAGTCAGTATTACAAACTGAGCAGCTGCAAAATGACGAGTGGGAGAATGCTGGTCAGAAAGAAGAGGCAGCAGCAGAGGAGGTAGTCGAGGAAGTGGCAGCAGAGGAGGCAGTTGAGGAAGTGGCAGCAGAGGAGGCAGTTGAGGAAGTGGCAGCAGAGGAGGCAGTTGAGGAAGTGGCAGCAGAGGAGGCAGTTGAGGAAGTGGCAGCAGAGGAGGCAGTTGAGGAAATGGCAGCagaggaggtggtggaggaaGAGGCAACAACAGAGGAGGTGGTTGAGGAAGAGGCAGGAGCAGAGGAGGTGGTCGAGGAAGAGACACAAGCAGAGGAGGTGGTCGAGGAAGACTTCACAACAGAAGAGGCAGTTGAAGAAGACTCAGTAACAGATGAGGTAGCTCAGGAGAATACTGAATCTGAGGAAGTGCCagttgaggaggaggagaggcaGTGAGTAAAGCGATCTGTAGTCTAAACCTGTAGGGTAACATAGGATATTGGAAAAGGACAGTCAATGGACTGATTCTGTGAATCTGAAAAATACACATCCtgcactgttgtttttttcttcctggaCTTATTTTCATACGGACGTCTTCCAGTGTCAGCTGCTTTTAATGTTTTGAACGTGTAATGAGTGTTCTGttttccaataaaatatttaaaacgtAAA

Function

GO: NA

KEGG:

id description
K13999 CKAP4, CLIMP63; cytoskeleton-associated protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336631 lncRNA downstream 26165 17558407 ~ 17564955 (-) True G284145
TU336632 lncRNA downstream 29313 17558407 ~ 17561807 (-) False G284145
TU336633 lncRNA downstream 37862 17548332 ~ 17553258 (-) True G284146
TU336619 lncRNA downstream 67477 17521426 ~ 17523643 (-) True G284135
TU336618 lncRNA downstream 75880 17513610 ~ 17515240 (-) True G284134
TU336663 lncRNA upstream 336 17594653 ~ 17594899 (-) True G284165
TU336792 lncRNA upstream 123588 17717905 ~ 17718238 (-) True G284273
TU336814 lncRNA upstream 167714 17762031 ~ 17764929 (-) True G284294
TU336815 lncRNA upstream 196217 17790534 ~ 17790763 (-) True G284295
TU336843 lncRNA upstream 256140 17850457 ~ 17850894 (-) True G284323
XM_034313293.1 mRNA downstream 84623 17498388 ~ 17506497 (-) True LOC113531974
XM_034313292.1 mRNA downstream 85666 17498388 ~ 17505454 (-) False LOC113531974
XM_034312988.1 mRNA downstream 96333 17486811 ~ 17494787 (-) True LOC117599443
XM_034313145.1 mRNA downstream 105699 17484558 ~ 17485421 (-) True LOC117599538
XM_026923395.2 mRNA downstream 110286 17462955 ~ 17480834 (-) True slc37a3
XM_026922984.2 mRNA upstream 17573 17611890 ~ 17616249 (-) True LOC113531978
XM_026923555.2 mRNA upstream 201567 17795884 ~ 17809289 (-) True gnsa
XM_034313218.1 mRNA upstream 313311 17907628 ~ 17971244 (-) False ano2b
XM_034313216.1 mRNA upstream 313311 17907628 ~ 17971244 (-) True ano2b
XM_034313217.1 mRNA upstream 313311 17907628 ~ 17971227 (-) False ano2b
trnar-ccg_5 other downstream 487483 17103565 ~ 17103637 (-) True trnar-ccg_5
TU336422 other downstream 626233 16958524 ~ 16964887 (-) True phf21b
TU335292 other downstream 2413507 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 5010057 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 5930793 11657890 ~ 11660327 (-) True G281092
TU337036 other upstream 384468 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 384468 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 476430 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 488921 18083238 ~ 18083309 (-) True trnaa-ugc_10
trnaa-ugc_11 other upstream 489466 18083783 ~ 18083854 (-) True trnaa-ugc_11

Expression Profile