RNA id: XM_026922658.2


Basic Information

Item Value
RNA id XM_026922658.2
length 2620
RNA type mRNA
GC content 0.47
exon number 4
gene id c18h12orf66
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8103474 ~ 8114786 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTAGTGCCATGGAAACATGGAGGCAAATATATACGGCGCGTGAGAGGaagctttaaataataatatgtaatttaACCGGAAACATGATGGTCCATGGAAGTGTTTTCGCCCTGGCTGTGTTTGAGAGAGATGCTGCTTGCAGAAAATTTAATCCTGAATCTTCAGCCATCATGGGCGAGGCTTTGCGTGAAGACGAGCTGCGGCCGGTTCCCAGAGAGAGAGCCGTGCTGGAGAGCTTCTTCACGCAGCTCGGCATGTTCTGGTTTGACCGAGCTAAAGACTACgtggagaaagagaaggagcaGAGCAGCAGGAGCGCCGCGGCCATCTGGAGCTCTCTGCTCGCTGCTCTGGCGCACCTGGCGGCCGCGGAGAAGGCCTACCACAACATGACCTTCCTCGGGCAAAAACTAGGTGGTCAGTCGTTCTTCAGCAGGAAGGATTCCATCAGGACCATTTACACGTCCCTGCAGAACGAGCTGAAGAAGGTGGTCTCCATGGGACGCCCGGCACCGACCAGCTCCACGCCGTACCTGGAGGAGCTGCTGTCGCATTTATCCGAGCAGCTGTGCCACTTCACGCAGGCCAGGATGGAGCTCGCTGACCTCTACGAGAAGATGCACTGCCTCGGGAGCCAGAAAACGGTCAACTCCGAGGAGCTGGTGAGCACGCTGGAGAGTATCCTGCACAAATACAGCTCCAGGTTCCATCATCCCATCCTGAGTCATCTGGAGAGTGGCTTCCAGGTGGAGGTGGACGTTTTGGCGCAGCTGCTACGCTGCCAGGCTCAGATCTCAGAGTGGCACTTCCTGCCCTCGCTGCTCAACTTGCACGGAGCTCACGCCAAACTGCAGGCATGGGCTCACGTGTTCGAGCGCCAGCGCGAGACCCGCAAGCACCTGTTCGGCGGCCAATCCCAGAAGGCTGTGCAGCCTCCGCACTTGTATTCATGGTTACAGCGCCTGCAGGGAGCGCTTTTGGCCAagttcagcttttatttccatgAAGCGCTGAGTCGGCAAGCACCGCCCTCTGAGATGAAGGCGCTGACGGCTCGCACTTCACCTGATTATTTTGGAAAGATCTCAGCCTTCGTGCGCAAGCATGACGCCACCAACGTTTCATTGGTGTTTGACAACCGTGGCATGGAGAGCTTCCAGGGCCACGGCTACCACCATCCACACTCGTACCGAGAGGCTCCCAAAGGCGTGGACCAGTTCCCTGCCGTGGTGTCTGTTCCGGGCGGCGAGCGGCCGTTAAACCACTGGCCCAACGTCATCATGATCATGAGCGACCGCGCCAACGAACTCAACACACTCGACAAGGTTACGTACTTTTACGACGACAAGGTCCAGAGTACGTACTTCATGACGAGACCCGAGCCTCACTTCACGCTTGTTGTGATCTTTGATGGCAAGAAGGCGGAGAAGGACTCGCACATCGTGGGCTTTCTGCATGAGATTTCTGGCTCACTGAGGAACTCCAAACCCTTCAGCACACTCAAGCCAGGCTCCAAAGGCTGaacatgatcatgtgacctacttCACATCTAGCATTCATTAACGTTAGCTATATAAACTTTGGCTTTCAGTTAATTTAGAAGAACATCTCATCCATCTGATTAAACAGGGTCTATTTGAGGCATCATGCTGCTGAaacttttaatattataatctttattttaatctcGAAGAAACACCAGAGGTCCAGTAGGCAGTCATTTTCATTTGATATTGTGAACTATTGtgaccaatcagaccacagatgttttttttttttgtttgttttttttttagtattttttttagcaattgAATTTCACTCCTGCTGCTATGAAACCTATTACaattcacattattttaatatgcagtgcataatattttaacagctgatcatttgattttataatttcctattttttgtactgtaattattgactaaaataaagtttagataTCATTTAAACAGTTAGCAACATGGACGTAATTGAACAGATTCATCGTGGGAGTTTATAAAGGAGTGACGTCTTTACAGTTTGCACTCGAATGATTTCACTGTTCATGtgctcagaaataaataaataaataatagctttAAAGGTGGTGTTGATTAAGTCAGAATACTTTTGGACATCTTTGGTGAAGTTCTCCTCACATTCCTGCAGCTTCAGTGAAATATCTGATTAGAAGAGAAACGCTAGTCTCTGGAAAATGggggggaaaagaaaaggaatgacgtggaccaccaacatccaaccaatcagcacAAAGAAGTGCTTCTACTTGGCCGTCGGTTCAGAAAGTTGTTCTAGCCTCGAAAGCATGGCTTTGGCGCGAACACAATGACTTTCTTGGTTTGAAGTTTGAGCTTCAAAACGCCCAGCTTTAGCTAGTTTCTGCCAAACTGCTGATTGCACCTTAATGTGAATTGTTCAGTGTTATGAGTAATCATCTGCATTTGCTGTTATTCTTGACTATTTTGtggctttaaattatttttatgtgaattaaataatgtgaataatataacattttacaGGAATGcaaactgaacttttttttttctctcatctgtATGAGTCGACACTTGATCTGTTATTAAACTGGAATGTTAAACCAT

Function

GO: NA

KEGG:

id description
K23297 C12ORF66; KICSTOR complex protein C12orf66

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330235 lncRNA downstream 136053 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 224457 7796835 ~ 7879017 (-) True G278520
XR_004579997.1 lncRNA downstream 569192 7530784 ~ 7534282 (-) False LOC117599592
XR_004579998.1 lncRNA downstream 569193 7530784 ~ 7534281 (-) False LOC117599592
XR_004579996.1 lncRNA downstream 569193 7530784 ~ 7534281 (-) True LOC117599592
TU330636 lncRNA upstream 102227 8217013 ~ 8217293 (-) True G278911
TU330657 lncRNA upstream 124188 8238974 ~ 8239676 (-) True G278920
TU330707 lncRNA upstream 274712 8389498 ~ 8390559 (-) True G278963
TU330836 lncRNA upstream 497332 8612118 ~ 8612342 (-) True G279064
XR_004579873.1 lncRNA upstream 583644 8698430 ~ 8698791 (-) True LOC117599455
XM_026922687.2 mRNA downstream 132903 7966873 ~ 7970571 (-) True avpr1ab
XM_034313092.1 mRNA downstream 146865 7946410 ~ 7956609 (-) False hcfc2
XM_034313093.1 mRNA downstream 147284 7946410 ~ 7956190 (-) False hcfc2
XM_026922997.2 mRNA downstream 147310 7946410 ~ 7956164 (-) False hcfc2
XM_026922995.2 mRNA downstream 147310 7946410 ~ 7956164 (-) True hcfc2
XM_026923834.2 mRNA upstream 106766 8221552 ~ 8226121 (-) False si:ch73-139j3.4
XM_026923833.2 mRNA upstream 106766 8221552 ~ 8226121 (-) True si:ch73-139j3.4
XM_026923517.2 mRNA upstream 124969 8239755 ~ 8247746 (-) True tymp
XM_026923507.2 mRNA upstream 135326 8250112 ~ 8281879 (-) False shank3b
XM_026923508.2 mRNA upstream 135326 8250112 ~ 8281879 (-) False shank3b
TU330291 other downstream 35397 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 509666 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2000327 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2070281 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 2111540 5981138 ~ 5991934 (-) False copg2
TU330637 other upstream 103775 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 694434 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1092565 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1507747 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 2154971 10269757 ~ 10296121 (-) False LOC113532274

Expression Profile