RNA id: XM_034313021.1


Basic Information

Item Value
RNA id XM_034313021.1
length 2087
RNA type mRNA
GC content 0.48
exon number 8
gene id tfec
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19095392 ~ 19107426 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATGGTGATCAAACCAACCAGATCAGTATTCTGATGGCTCTCTGTTTGAGGTGATTATCACACTAGGCCATAAAAGGGCAAGCCAGCCTCCCTGTTAATTAGGTCTTTTACTACACCCAGTCGGTTTATAAAGAGTGCTGGATAGGAGGGGAGAGTCACATCATATCCACTCAACAGATAACTTTAGCCTGGGATCCTACTAGAGTTCCTTGTCAGAGCTGCAGAGGACACGCGGGTTCTGAGAATGCCACATTTATCTGATTGTAGCTACTACATGATGCGAGACGGAGCCCAAGTTGCCAGTGTTCAGAACCACCTGGAGAACTCCAAGTACCACCTCCACCAAGCCCAGGCCCAGCAGGTCAAACAGTACCTGACTCTAGGCACCAAGCTTCCCGGCCAGGCCCACCCACACCCGGGCCAGGCCCTGGGCACAATGCCTGTCATGCGCAACGGCCATATGACACCTGTCAGCAACAACAGCACGCCTGGCAGCCCCGTCACCCTGTTCACCCTTGCCAATAGCCACGACACTGAGTTTCCAGTGGACGAAGTTATTGATGATCTTATTGGCTTTGAATCTGGGTTCAATGATGGGAGCTTGGAGTGTATGGAGCCTAGCatcataatgcaaaataatGTGGCCCTGAACAGCGGCATGCTGGAAGTCTATGGCGGTGACCAAGAACACGACACCAGAGTCTTAGCAAAAGAGAGGCAGAAGAAAGACAATCACAATCTGATTGAAAGAAGGCGACGATACAACATTAACTACAGAATCAAAGAGCTTGGAACTCTGATACCGAAGTCCAATGACCCTGATATGCGCTGGAACAAAGGGACCATCCTCAAGGCCTCAGTGGAGTACATTAAGTGGCTGCAGAAAGAGCAGCAACATGCGCGAGAGCTGGAGAGCCGCCAGAAGAAGCTGGAGCAGGCTAACAGGAGACTGCTGCTCAGGATTCAGgaGTTAGAGATCCAAGCTCGTGCTCATGGTCTGCCTAGTAATCTGGGAGCAGCGGAGCTCTCATCTCACCTCatcaaacagcagcagcaggcacTTCCTGCTCCTGCGGTTACTCCTGGAGCACAGACTTCTCTCTACCCACAGGATGAGCTGAACGGCCCCGAGTACCTCCAGAGGAACTCCCTGTCTGCGCTCCATGCCAGAAATGAGGGCAACAGCAGCTCCTCTGGTGAGCATGCAGACACCTCTTCGACCACCTTCTCGGACCCGCTGTCGCACTTCACGGACTTCTTTAGTGCCACTCTGAAGGAGGAACAGCGGCTGGACGAGCTCCTCATGGAAGAGGCGCTGTCTCCGTTCGGGACTGACCCGCTGCTTTCAGCCACTTCGCCCAATGCCTCTAAGGGAAGCAGCCGCAGGAGCAGCTTTAGCACGGATGACAACGACGACCTTTGACCGCTGTTTTCCCACACTTCTGGACCTGGCGTATGTGACTGACCTGCAGCTTTTCTGCTAGACACAGGGACACATCTTCTATGTCTCCTGGAAAATCAGAAACATCAAAAAGGAGAGATGAACTGATATTGTGAAACTACTGTACAGCCTGCTGCGTCTGACGCACAGCCTTTACCGTAGACGCTTGTAACACTGGTCACACACATCACTGGACTATTAAAACTGTATATTTCTGAAGTGTAATATAATGGCATTGTTCATAAGGACCACTAAAGGAAAAAGTGAAGAGAACATGGAGAAGAGGagcttttttccctcctctgtCATGCCTTAACTAAAACAGGGTTAgctttataaacatatataagtGGAAgtgttgtaaatgtaatttaacagCAATAAAACTAACATGCCTTTTTGTTTCTAAagtatttttaaaggaaaatatcactttgtgtatttatacatcCTAATCCCTGtattgttggaaaaaaaaattcttagacAATCTAACAAGTTTCCTTTTTTATATCTTTGGGGTGGGAAAAATACATTAAACCCCTTTTTGATAAACCAAGtctgcttttctttcattccttctaAACACCGTGACATTCCATCTCAGTTCAACAGGGGTTAAATATGTAAaaggacattttaaat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337468 lncRNA downstream 157301 18868057 ~ 18938095 (-) False G284885
TU337467 lncRNA downstream 157301 18934868 ~ 18938095 (-) True G284885
TU337489 lncRNA downstream 172499 18918456 ~ 18922897 (-) False LOC117599567
XR_004579967.1 lncRNA downstream 172526 18918396 ~ 18922870 (-) True LOC117599567
TU337464 lncRNA downstream 233244 18861845 ~ 18862152 (-) True G284882
TU337873 lncRNA upstream 185514 19288591 ~ 19290806 (-) True G285245
TU337891 lncRNA upstream 253483 19356560 ~ 19357907 (-) False LOC113532309
XR_003403326.2 lncRNA upstream 253897 19356974 ~ 19385863 (-) True LOC113532309
XR_003403325.2 lncRNA upstream 266250 19369327 ~ 19385863 (-) False LOC113532309
TU337928 lncRNA upstream 302002 19405079 ~ 19405317 (-) True G285287
XM_026922985.2 mRNA downstream 307499 18781747 ~ 18787897 (-) True ppp1r3aa
XM_026923414.2 mRNA downstream 347563 18747031 ~ 18747833 (-) True LOC113532190
XM_026922762.2 mRNA downstream 351234 18739775 ~ 18744162 (-) True gpr85
XM_034313317.1 mRNA downstream 419951 18665209 ~ 18675445 (-) False tmem168a
XM_026923199.2 mRNA upstream 37368 19140445 ~ 19161281 (-) True lta4h
XM_026923684.2 mRNA upstream 87419 19190496 ~ 19247363 (-) True cdk17
XM_026923685.2 mRNA upstream 87419 19190496 ~ 19231087 (-) False cdk17
XM_034313075.1 mRNA upstream 149746 19252823 ~ 19254197 (-) True LOC117599463
XM_034313076.1 mRNA upstream 157636 19260713 ~ 19262044 (-) True LOC117599464
trnae-cuc_38 other downstream 883003 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 907398 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1002852 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1004774 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1011542 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 1209990 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1319324 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2357749 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2357749 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2357750 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile