RNA id: XM_026922676.2


Basic Information

Item Value
RNA id XM_026922676.2
length 2228
RNA type mRNA
GC content 0.47
exon number 14
gene id dclre1c
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8301479 ~ 8311669 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctcATGGTTTCCTGGTATGGCGTGTGTTGGTGTTTCATGAGTTTGAACTGAAGAGTAAACGTGTGAAGGAGATGTTTTTGGAAAGTCAGAGTCTTCTAGCTCAGCATGAAGCTGTATAATCTGTATATGAAGCTAGGTGTTTAGGTTAGCTAAGCTGGGATTAGTGTGAGAAAGTCAGAATGAGTTCCTTCCCTGGACGGATGAAGGAATATCCAAACATCTCCATTGACAGATTTGACAGAGAAAATATACATGCCAGagcttattttctctctcactgtcataAAGATCATATGAAAGGATTGAAAGGACCTTTACTGAAGAGAAAATTAAAGTTTAGCTTGACTGTAAAGTTGTACTGCTCGTTTGTCACGAAGGAGCTCCTACTCAACAATCCAAAATATAGCTTCTGGGAAGACCGCATTGTTGCTCTTGAGTTAGACAGTCCCACACATATATCACTGACTGATGAACTTACAGGAGAGGTGGAAGATGTTGTTGTGACGTTGTTGCCGGCTGGGCATTGCCCTGGATCAGTCATGTTTCTCTTTGAGGGGGCTCAGGGCACCGTGCTGTACACTGGTGATTTCCGACTGGCTGCTGGAGACGCAGCGAGGATGGAGCACCTGCACTCTGGAAACAGAGTAAAAGACATTCAGAGTGTGTATTTGGACAGCACGTTCTACGACCCCAGGTTCTATCAGATCCCTAGCAGGGAGGCTTGTCTGACTGGTATCAGGAAGCTGGTTCATGACTGGATTTGTCTGAGTCCATACCACATAGTATGGTTGAACTGCAAAGCAGCATATGGTTATGAATACCTCTTCACCAACCTGGGGCAGGAATTTAATTCACAGGTCCATGTGAACAGATTGAATATGTTCAGACAAATGCCAGAAATCCTGGATCACGTGACCACAAATAGAGCAACACAGATCCACGCCTGCAGGCACCCTAAGGATGATGAGTTGTTCAGGACAAACAGACTGCCGTGTGGCTCTTTAGCTCCGGATGGTACACCATTGCGCATCATCAGCATCAAACCTTCCACTATGTGGTTTGGAGAACGAACTAGGAAGACCAACGTCATCGTCAAGATGGGTGGAAGCTCCTACAGGGCTTGTTTCTCTTTTCATTCCTCATACTCCGAGATCAAGGATTTCCTCTCCTACATCAGTCCTGTTAATATTTACCCTAATGTGGTTCCAATGGGCCGAACTGTGGAGGAAGTCACTGAGCTactGAATCTTATGTGTAGAAAACATTCAGGAAGGGCCGAGGTTGTCTATAAGCCTCTTGGGAAGCTGAAACGAGCCAGAATAAAGTCCACGTCTCAAGGCACGGACAGTGAGGACGAGCTGTTTGCGGAAGTTGCTGTAGCACCGATGAGAAAGAAGCTTGCTGTGAATGAGGAGAAAGAGCACCACAGCCCGGAAAAATCAGATCCCGAGGTCATAGAGACACAAATTCTACCACAGCTGCAGCCTTCATTTCAGACATCCAACTACATGGACTGCACAGAGtccaatgatgatgatgatgatggtgatgaagatgacgtggaggaggaggaacgTCCTGCATGTCAGTCATCTGGGGATGCTACACCCACTCCATCCTGCTTAGGTATGTCCCCACCCCCTCCGAAGCCGGCCCCGCCTAGCTGGAGTACATTCTTCACAGCAGAGCCAGTTGTGACTGATGACAGCTGTGAGCTGGAGAACAGTCAGAACAGCCAGACTCTGTCTACTGATCACACAACGTCGCAGTCCCCTGAGCTCTTCAATGATGACGATGAATCTGAGTCAGGTCATGTGACTTCCTCTCAGTCGACGTATGTATCAGAGGCAGCTTTAGAGAGCCTCAGCCAACTCGACACAGTGCCTGTACAATGTAACCCCATGCACACAGGGAACGGTTTTAATTGGCCGGATGACGCACAACCAGCTTTGACTGACAGTCACCAGGACCAATGCGATGTCACAGACCAAACAGAACCAGTTTCAGATTCGCAGGTGTCATCTGATTTTGATCTGCCAATGACTCCGGGCTCCAAGGCTCCTCAGCCTGAGGAGCTGAAGGAGCTGTACAGGAAGTTGGCTGCTGGAGAGGACGTGACCACCAAAAATCATCAGCAGGGTTCAGTTTAATCAGAGATTCCACGGCTGGAATGATCATCTTGCcaaattaacaaacaaaaatttgGATTctcataccaaaaaaaaaa

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006259 DNA metabolic process biological_process
GO:0004518 nuclease activity molecular_function

KEGG:

id description
K10887 DCLRE1C, ARTEMIS, SCIDA; DNA cross-link repair 1C protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330657 lncRNA downstream 61803 8238974 ~ 8239676 (-) True G278920
TU330636 lncRNA downstream 84186 8217013 ~ 8217293 (-) True G278911
TU330235 lncRNA downstream 334058 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 422462 7796835 ~ 7879017 (-) True G278520
XR_004579996.1 lncRNA downstream 767198 7530784 ~ 7534281 (-) True LOC117599592
TU330707 lncRNA upstream 77829 8389498 ~ 8390559 (-) True G278963
TU330836 lncRNA upstream 300449 8612118 ~ 8612342 (-) True G279064
XR_004579873.1 lncRNA upstream 386761 8698430 ~ 8698791 (-) True LOC117599455
TU331172 lncRNA upstream 881947 9193616 ~ 9194003 (-) True G279382
TU331392 lncRNA upstream 1024667 9336336 ~ 9337530 (-) True G279588
XM_026922672.2 mRNA downstream 10806 8283796 ~ 8290673 (-) True cdnf
XM_026923507.2 mRNA downstream 19600 8250112 ~ 8281879 (-) False shank3b
XM_026923508.2 mRNA downstream 19600 8250112 ~ 8281879 (-) False shank3b
XM_026923509.2 mRNA downstream 20379 8250112 ~ 8281100 (-) True shank3b
XM_026923515.2 mRNA downstream 24605 8250112 ~ 8276874 (-) False shank3b
XM_026922634.2 mRNA upstream 11326 8322995 ~ 8334489 (-) False dmtf1
XM_026922633.2 mRNA upstream 11326 8322995 ~ 8334489 (-) True dmtf1
XM_026923666.2 mRNA upstream 46641 8358310 ~ 8388357 (-) False tspan9b
XM_026923665.2 mRNA upstream 46641 8358310 ~ 8372506 (-) True tspan9b
XM_034313192.1 mRNA upstream 79009 8390678 ~ 8426367 (-) True mical3b
TU330637 other downstream 81799 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 233402 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 707671 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2198332 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2268286 6033029 ~ 6033193 (-) True LOC113532437
XR_003403340.2 other upstream 497551 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 895682 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1310864 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 1958088 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 2683436 10995105 ~ 11007143 (-) True si:ch211-51e12.7

Expression Profile