RNA id: XM_034313374.1


Basic Information

Item Value
RNA id XM_034313374.1
length 1939
RNA type mRNA
GC content 0.46
exon number 13
gene id pgm3
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11461887 ~ 11469636 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttagcaaaattattgagagaaaaaaagaagcaatcgTAAAACTGCgtttgtattttttatgaaCACATTTATTCTAGCCGAGATGCCAGTATTGCACCATGGCCCAGTTTGAGGAAGTGTCCAAGAAATCTGCACTCCATCCAAAACCGAAGGGGCTGACATTGCAGTACGGTACGGCAGGGTTCCGCACCACTGCGAATCATTTGGACCATGTGATGTTCCGCATGGGCCTGTTGGCCACGCTGAGGTCCAAAAAAACCAAGTCCACCATTGGAGTCATGGTCACTGCCTCTCACAATCCAGAGGAGGACAATGGGGTGAAGCTGATTGACCCAATGGGGGAGATGGTGACTCCAGCTTGGGAAGACTATGCCACTCAGCTGGCCAATGCAGAACAGGAAGCTTTATGCACTGTCCTGAAGGATATCATTGAGAAAGAAGCCATTGACATGAGTGAGGCAGCGAGTGTTGTCACTGGCCGTGACACCAGGCCAAGCAGTGAGAATCTGTCACGGGCCGTGTTGGATGGAGTTTCCTGTTTAGAAGGCCATAGTCTAGaCTTTGGCTTGGTGACCACACCTCAGCTGCATTATATGGTCCTATGTAGCAACACCAATGGTTGCTATGGAACTGCTACAACACAAGGATATTATGAGAAACTCTCCAAGGCTTTCATTGAGCTCACTAAGAATGCCCCGAAACGCACTGATGACCAGAAGAGGCTGCTGGTGGATGGGGCCAATGGGATCGGAGCATTGAAGATGCGAGAAATGGAGGCATTTCTCAAGTCTGAGCTGCAGGTGGAGCTCTTTAATGATGGCAGCAGTGGCAGACTTAACTATCTGTGTGGAGCCGACTATGTGAAAGTGCAGCAGAAACCTCCACAAGGTATGCATATGGGGCCGGTTCAGCGCTGCTGCTCCTTCGATGGTGATGCAGATCGTATTGTTTACTATTATAATGACTCTGCTGGACGTTTCCATCTTTTGGACGGAGATAAAATAGCTACTCTGATTAGCACATACCTCAAGGAGCTTTTGACACAGGCAGGGCTGAACCTGCAGGTCGCTGTGGTTCAAACAGCATATGCCAATGGAAGCTCTACACAGTACCTTGAAAATGTCATGAAGGTTACAGTGTGCTGTACGAAGACAGGAGTGAAGCATCTACATCACGCAGCTCAGGAATTTGACATTGGAGTTTACTTTGAAGCCAATGGCCATGGAACTgttctgtTCAGTAAAAAAGCAGAGGAGAAGATCCAGCAGCTAGCCAAAGACCCGAATGCGAGTGATGAGAAGAAACTCGCAGCAAAGCTTCTGGAGAACACTGTGAACCTTATCAACCAGGCTACAGGTGATGCCATTTCAGATATGCTGCTAATTGAAGCAGTGCTGGCTATCAGAGGGATGACTGTTCAGGAATGGGATGCTATTTACACAGACCTGCCCAATCGCCAGCTCAAAGTCAAGGTAGCAGACAGGCGTGTGATAGACACAACGGATGCAGAGCGTCGGGCAGTAACACCAGCAGGATTACAAGACTCTATAGACGCTCTGGTCCAGAAGTACAAACAAGCCCGGGCCTTTGTTAGACCCTCTGGCACTGAGGATGTGGTTAGAGTGTATGCTGAAGCTGACACCCAGGAGAATGTAGATGGCTTGGCACATCAAGTAAGTTTGGCTGTATATCGACTAGCTGGAGGAGTTGGAGAGGAGCCAAAGCCTTTAAAGTGATGCCGAGAGTAAACACTACATTTTAGATCATTCAGATTATTTCTGATTTGATGCTGCACTTCTTGGTTGCACTTTGACTTTGGACAGTGCTTATATAAACTGTGAAAAGTTGTTTTTGATACTAtcatgtaaaaattgttcattttagcaaaaataatcatgaaaggatgaaaacagtaataaaagaaTGTGATCTCATAA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006048 UDP-N-acetylglucosamine biosynthetic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0004610 phosphoacetylglucosamine mutase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333037 lncRNA downstream 102251 11359362 ~ 11359636 (-) True G281021
TU332834 lncRNA downstream 201896 11259791 ~ 11259991 (-) True G280841
TU332800 lncRNA downstream 277744 11183066 ~ 11184143 (-) True G280818
TU332799 lncRNA downstream 279836 11179931 ~ 11182051 (-) True G280817
TU332792 lncRNA downstream 289441 11169886 ~ 11172446 (-) True G280812
TU333091 lncRNA upstream 92401 11561725 ~ 11562064 (-) True G281057
TU333104 lncRNA upstream 114069 11583393 ~ 11583637 (-) True G281070
TU333109 lncRNA upstream 119679 11589003 ~ 11589687 (-) True G281075
TU333143 lncRNA upstream 238366 11707690 ~ 11710984 (-) True G281102
TU333155 lncRNA upstream 270406 11739730 ~ 11752892 (-) False dusp16
XM_026923832.2 mRNA downstream 7437 11444110 ~ 11454450 (-) True ccnc
XM_026923788.2 mRNA downstream 20280 11426058 ~ 11441607 (-) True faxca
XM_026923140.2 mRNA downstream 81704 11356060 ~ 11380183 (-) False tmem63a
XM_026923559.2 mRNA upstream 18180 11487504 ~ 11492269 (-) False foxm1
XM_026923557.2 mRNA upstream 18180 11487504 ~ 11492269 (-) False foxm1
XM_026923558.2 mRNA upstream 18180 11487504 ~ 11492020 (-) True foxm1
XM_026923415.2 mRNA upstream 120489 11589813 ~ 11596577 (-) True ada2b
XM_026923285.2 mRNA upstream 127444 11596768 ~ 11601405 (-) True atp6v1e1b
TU332827 other downstream 202495 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 454744 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1165766 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1839268 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 2253324 9207351 ~ 9208563 (-) True G279415
TU333108 other upstream 116980 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 188566 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1111599 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3705024 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5489200 16958524 ~ 16964887 (-) True phf21b

Expression Profile