RNA id: XM_034313018.1


Basic Information

Item Value
RNA id XM_034313018.1
length 1376
RNA type mRNA
GC content 0.47
exon number 7
gene id tmem19
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10931347 ~ 10940102 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACTGAAAGACacagtggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagacacagacagagttCACACTGAAAGACACAGTGGCTTGTGTGCTGTGCAGCAGCTGCACCTCTCAAAAGGAGTAACACGTTTTGTGGATGACAAACTGCTAAAGAAGTTTGTCAAGATGATGACTGATCTCATAGTGTTGTGTTTCACTTTGGCCATCTCCTTGTCCTTTTGGATCATATCCATAGCTATCAGCACTTACTCCGGTACATTGCAGCCTGTGTCTCCATGGCGATGGCTGTTCTCAGTTCTGGTCCCGCTTATTATCACGTCTCGCGCTTTCAAGAAAAAGAGTCTCGATTTTGGTGGTTGTTTGGGAGCATTACTGGTTGGTTTTATTCTCACCTTGGCCAACATGAGCTTCCTGGCAGCTTTGTTTGCTTTCTTCATCACCTCCAGCAAACTGACACGATGGAAGGGTGCGGTCAAGAAACGCATCGACTCAGAATATAAAGAAGGTGGCCAGAGGAACTGGATACAGGTTTTCTGTAATGGAGGTGTGCCGACAGAGCTAGCTTTGCTATACATGATAGAAGTCGGTCCAGGAGAGATGCCTGTAGATTTTACGGTGCAATACTCCGCATCGTGGATGTGCTTGTCACTCCTGGGAGCTTTGGCCTGCAGTACGGGTGACACCTGGGCTTCAGAAGTAGGTCCTGTTCTCAGTAAGAGCCAACCCAGGCTCATTACCACATGGAAGGAAGTCCCAGCAGGTACCAATGGAGGAGTGACCATCGTTGGTCTTGTAGCTAGCTTGCTTGGTGGAGCCACTGTGGGCGTGGCTTACTTCATTTCTCAGCTCCTGATGGTTAGCGATCTGCATTTGGCAGCCCCTCAGTGGCCTATTGTCGTGTATGGTGCTGTGGCGGGCTTCCTCGGCTCATTGCTTGACTCTTTGCTGGGTGCAGTCATGCAATATTCAGGCTATGATGAAAGCACTGGGAAGGTTGTCAACTTTGAGTCACCAAAAGTAAAGTGGATATGTGGGAAACCTATTTTGGATAACAATGGTGTAAACCTCTTCTCCTCAGTCCTCATAGCTCTGATCCTGCCAGGAATTGCATGGGGCGTCTGGCCCACGCGCTGATCCACTAAAGGCGACCATGCACAACTGCAACTGGATTTGCAACAAATGTGCTTGCAAGCCATTTACATGCCACTAGCtagaatgtttttaatttggGATCATTATGGACCTAACCTGGAGATTAAATCTTTAGATCAAAATCCATCTGTGATGATTTACTGTGAATGTTCAGTGTTGTTACTGTTTTAGTGATTcttattaaagattttttaaaagacattttt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332613 lncRNA downstream 367 10930738 ~ 10930980 (-) True G280652
TU332595 lncRNA downstream 22717 10906173 ~ 10908630 (-) True G280640
TU332558 lncRNA downstream 147054 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 153450 10776763 ~ 10777897 (-) True G280527
TU332265 lncRNA downstream 460972 10468686 ~ 10470375 (-) True G280360
TU332738 lncRNA upstream 139821 11079168 ~ 11079487 (-) False sobpb
TU332792 lncRNA upstream 230539 11169886 ~ 11172446 (-) True G280812
TU332799 lncRNA upstream 240584 11179931 ~ 11182051 (-) True G280817
TU332800 lncRNA upstream 243719 11183066 ~ 11184143 (-) True G280818
TU332834 lncRNA upstream 320444 11259791 ~ 11259991 (-) True G280841
XM_026923328.2 mRNA downstream 2931 10913634 ~ 10928416 (-) True rab21
XM_026923230.2 mRNA downstream 45911 10830886 ~ 10885436 (-) True ptprr
XM_034313394.1 mRNA upstream 1771 10941118 ~ 10974696 (-) False LOC113532419
XM_026923839.2 mRNA upstream 1771 10941118 ~ 10974696 (-) True LOC113532419
XM_034313395.1 mRNA upstream 1771 10941118 ~ 10974324 (-) False LOC113532419
XM_034313264.1 mRNA upstream 60662 11000009 ~ 11007143 (-) False si:ch211-51e12.7
XM_026923253.2 mRNA upstream 62818 11002165 ~ 11007143 (-) False si:ch211-51e12.7
TU332243 other downstream 635226 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1308728 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1722784 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2122009 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2711667 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 55758 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 299588 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 646957 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 718543 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1641576 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile