RNA id: XM_026922697.2


Basic Information

Item Value
RNA id XM_026922697.2
length 2213
RNA type mRNA
GC content 0.49
exon number 7
gene id tspan12
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9167589 ~ 9188935 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCACTCAGTTCGCCTTTAGGACCCGGAGGCTGACACTcggggggggagagagagacagagacagagagagagagagagagagagagttctccCAAACTTCCCACATGCATGCACAAGTTAAACTGACAGAGCCTGCCCCAGACTGAGCAGAGTGAAGTCAGACAGTCAGCTCCCACAGCAGTCAGCTGCAGTAAAGTGGAGTCCACAGCGCGTGCAGCTCACTCTGGGACCTTCCTATACTTCAGCGCTGCTTATTTCCACTAAATAAGGCACTGAAATGAAAGAGGATTATTAACCCCACTGCAGCATGGCACTTCTGTTCAAATGGCTCTGGGATTGTTTTTCGTCATAAGTGCCCATTCGCGCGAGCATCCGCCATCCTGAGGCACGAGGAAGCAGCAAAAGCAGCGAAACCACCTGTTGCAAATGCTTTCAGGGAGAAAGAGAAGCCTTCCCACggatataacacacacactgacacacactgagcgCTGCACGTGCTAACACAGCGCCCACGGATCGCCACCGTTATCTTTTAATCGGTTTCTGACAAGCCATGTGACTGCCAAAGGAGTGTTTTTCTCCTTGCACTATTTcggctaaaaaaaacaaaaaaacaacaaatctgCCAGCGGATCGCGCGCGCGCACGGTGGCCAGCGTCAGAGCGGTAGAATGAGGAATGAGGCGCGTGCACGATGGCCCGAGAGGACTCGGTGAAGTGCCTGCGCTGTCTGCTTTACGCTATCAACTTACTCTTCTGGCTAATGGCCCTGTGTGTGCTGGGAGTGGCCGCGTGGCTTAGGGATTACCTGAACAATGTCCTCACCTTAACTGCGGACACCAGGCTGGAAGAAGCAGCGGTCCTCACATACTCCCCTGCGGTCCATCCTGTTGTCATCGCTGTGTGCTGTTTCTTAATCATCGTGGCCATGGTGGGCTACTGTGGCACGCTGAAATGCAATCTGCTGCTCCTCTCCTGGTACTTTGGCAGTCTGTTGGTGATCTTCTGTGTGGAGTTGGCCAGTGGTGTGTGGACATACGAGGAGccatCAGTGCAGAGGTCAGACATGATCAGCCTGAAGTCACGCATGCCCAACTACGGTCTGCAGCGCTACCAGTGGCTAACACACGCCTGGAACTCCTTTCAGACTGAGTTTAAATGCTGCGGCGTGATCTATTTCACCGATTGGCTCGAGATGACGGAGATGGAGTGGCCACCTGACTCCTGCTGCTCCAATCAGTATGCAGGCTGCGCTCGGCACGCCCACTACAGTGACCTGAGCGACCTCTATCAGGAGGGCTGCGGTCCCAAGATATACAGTTTCATCCGAGGCACGAAGCAGCTGCAGGTCCTTCGCTTCCTGGGTGTGTCTATAGGAGTGGCGCAGATCCTGGCCATGACGCTGACCCTCACGCTGCTCTGGGCGCTCTACTACGACCACAAGCCTCCCGATCCTACTCCACCtgacacaattacacacacacactgccttgcCGAGGAGTCCCAAAAACCTGGCCATGGGTACCTACGGACATCTGACACGTGGGCTAATGGACACAGCCAGTTTGAGATGGAGCAGCTCTCCTAGCAAACACTGTACGATACGAATGAACGGTCCAGTTTCATTACGATTGTGTACAGCCATCCATTGCCGTCGTTATGAAGAGTTATCAactctcctttttttctaaCATATCTAAAGCATGTGGAACTTCTTCTGTAGACTGGAACTGCAGCTCCAAAGGGGGTGAGGTAGCAGGGAATATACAGCACCCTATACAAGGATACACATTAGGACGCTGTAGAACACTCACCACGTACCCTTAAAAGCTCTACACACTCAAACTAAGTAACCAAAGAAGATTGTGGAGGCTAcgtgatttttttattcatatttttaccTGACATTTCGGGATTTAAAGGACTATAATCACTAGAAACGCACATAAACTTGGGTCTTAACTTGTTTTTTAAGGGTGTATTAATGAACTGCTAttctaagctttattttttttgatgtaCAAAAAAACTACATGTCTTAATTCACTAGCACTGTGATGTAAATTATAGAACAGTTCTAGTTTTAGACAATAAAATGTTACAGCGGTGGCTTTGCATAAGAAAAGTTGAACACAAGCTGTGCTTTTTAATTACGTAGCATGTACACTGAAGCATGTGTGTGAATTACAGTGCATTTAACAATCAGAA

Function

GO:

id name namespace
GO:0045765 regulation of angiogenesis biological_process
GO:0010842 retina layer formation biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0042813 Wnt-activated receptor activity molecular_function

KEGG:

id description
K17355 TSPAN12; tetraspanin-12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579873.1 lncRNA downstream 468798 8698430 ~ 8698791 (-) True LOC117599455
TU330836 lncRNA downstream 555247 8612118 ~ 8612342 (-) True G279064
TU330707 lncRNA downstream 777030 8389498 ~ 8390559 (-) True G278963
TU330657 lncRNA downstream 927913 8238974 ~ 8239676 (-) True G278920
TU330636 lncRNA downstream 950296 8217013 ~ 8217293 (-) True G278911
TU331172 lncRNA upstream 4681 9193616 ~ 9194003 (-) True G279382
TU331392 lncRNA upstream 147401 9336336 ~ 9337530 (-) True G279588
TU331405 lncRNA upstream 197198 9386133 ~ 9387789 (-) False G279592
TU331406 lncRNA upstream 197198 9386133 ~ 9389747 (-) True G279592
TU331436 lncRNA upstream 295158 9484093 ~ 9484948 (-) True G279620
XM_034313254.1 mRNA downstream 533634 8626921 ~ 8633955 (-) True hsp90b1
XM_034313061.1 mRNA downstream 618961 8488152 ~ 8548628 (-) False sbf1
XM_026922951.2 mRNA upstream 100160 9289095 ~ 9291409 (-) True parietopsin
XM_026923675.2 mRNA upstream 149833 9338768 ~ 9347046 (-) True LOC113532331
XM_026923676.2 mRNA upstream 149833 9338768 ~ 9347043 (-) False LOC113532331
XM_026923677.2 mRNA upstream 149833 9338768 ~ 9347043 (-) False LOC113532331
XM_034313366.1 mRNA upstream 161943 9350878 ~ 9359050 (-) True LOC113531956
XR_003403340.2 other downstream 358251 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 947909 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1099512 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 1573781 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 3064442 6103076 ~ 6103147 (-) True trnam-cau_46
TU331209 other upstream 18416 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 433598 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 1080822 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1806170 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 2050000 11238935 ~ 11259392 (-) True vegfab

Expression Profile