RNA id: XM_026922701.2


Basic Information

Item Value
RNA id XM_026922701.2
length 2514
RNA type mRNA
GC content 0.52
exon number 16
gene id gys2
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4897270 ~ 4917780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAGCATCTGGAGTTCTTCCCATCATGCCCCTGACCAGGTCCGTGTCCATGAGCTCACTGAGCGGCCTTCCTCTGTGGGAGGAAGAGGAGTTACCCGTGGAGGATCTGCTGCTGTTTGAGATAGCATGGGAAGTCACCAACAAAGTGGGAGGAATTTACACCGTCATCCAGACCAAAGCTAAGACCACAGTGGATGAGTGGGGTGAGAACTTCTTCCTGATCGGCCCTTACTACGAACACAACTTCAAGACTCAGGTGGAGAAATGCGAACCTCCAAACGCCGCCGTGAAAGCAGCCATGGACTCCATCACCACCAACGGCTGTCAGgtgaacTTTGGCCGGTGGCTCATAGAAGGCAGCCCGTATGTGATCCTGTTTGATATCGGAGCTGCTGCCTGGAACCTGGACCGCTGGAAGGGAGACTTGTGGGACGCTTGTGGTATCGGACTGCCGTACCACGACCGAGAGGCCAATGACTCGCTCATCTTCGGCTCTCTCGTGGCCTGGTTCTTTAAAGAGTTAACAGATCGGCTTCAGGACAAACCCAAAGTCATCGCTCACTTCCACGAGTGGCAGTCAGGAGCCGGCCTCGTGCTCAGTCGCTCCCGTAAGATTCCCATGGCCACCATGTTTACTACACACGCTACACTTCTGGGTCGCTACCTGTGTGCTGGAAATGTGGACTTCTACAACAACCTGGATAAGtttgATATAGACCGGGAGGCAGGAGATAGGCAGATCTACCACCGCTACTGTCTGGAGAGAGCTGCAGTGCACTGCTCGCACGTTTTCACCACCGTCTCCCGGATCACAGCGGTGGAGGCCGACCACATGCTTCACAGGAAACCCGATGTGGTTACACCAAACGGTCTGAATGTAAAAAAGTTTTCAGCTATGCACGAGTTTCAGAACCTGCACTCGCTGAGCAAACTGAAGATCCAGGAGTTTGTGAGAGGACACTTCTACGGGCATCTGGACTTCAATCTGGAGAAAacacttttcttcttcatcGCAGGCCGGTACGAGTTTTCCAACAAGGGAGCCGATATCTTCCTGGAAGCGCTGTCCAGACTAAATTACCTGCTTCGGgtGCATAAGAGTGACGTGACCGTGGTGGTTTTCTTCATCATGCCGGCTAAGACTAACAACTTCAATGTGGAAAGTCTGAAAGGGCAAGCCGTGCGCAAGCAGCTGTGGGACACTGCGCAGTCGGTGAAGGAGAAGTTCGGCAAACGCTTGTATGAGGCCTTGTTAAGGGGCGAGATCCCAGACATGAGCAAGATCTTAGACAAAGACGACTTCACCATAATGAAGAGGGCCATTTACGCAACGCAGAGACACACTCTCCCTCCAGTGACCACTCACAACATGCTGGACGACTCGACGGACCCCATCCTGGGCAACATCCGCCGCATCGGCCTCTTCAACAGCCGCAACGACAGAGTCAAGATTGTTTTCCACCCCGAGTTCCTGTCCTCCACCAGCCCACTGCTGCCCATGGACTACGAGGAGTTCGTCCGCGGCTGCCATCTGGGAGTGTTTCCTTCTTATTACGAACCCTGGGGATACACACCAgGCGAGTGCACGGTGATGGGCATCCCGAGTGTGACCACTAACCTCTCTGGCTTCGGCTGCTTCATGGAGGAGCACATATCAGACCCGACTGCCTACGGGATTTATATCGTGGACCGGCGTTTCCGCTCAGCAGATGAGTCGTGTAATCAGCTCACTCAGTTCATGTTCACGTTCTGCCAGCAGTCACGACGGCAGCGTATCATCCAGCGCAACCGCACCGAGCGCCTGTCAGACCTGCTGGACTGGAGATACCTCGGCCGGTTCTACATGCACGCCAGACACCTGGCCCTCAGCAGAGCTTTTCCTGAACAATATAAAATCGACACACTCGCACTTCCACCGACTCAAGGATTCCGTTACCCCCGACCCTCCTCGGTCCCGCCCTCTCCCTCGGCCTCCCTCCACTCCACCCCGCATCACAGTGACGCCGAGGACGAGGACGAGGACGAAGACACGGACGAGCCCTACGATGAAGACGAGGAGGCCGAGAGGGACCGAGCGAACATCAAGTCGCCCTTCACTCCAAACGCCATACCAAAGGGTAAGAAGAAGCAACCGGGAGAGTATGGGAATTAGAGTTGCCCCCTCCCCCACTATATAATACCCCGCCCATTTTCACACTTTGCCCCTCCCACTTATTCATCTCAACCTCATTGAGAGACATTTTGGTTCATTAGTAGTATGAAGCAATATGATAATCATGAAGTCGtcgcatttctgatttttttttttttcattcagtctATAAAGATAACAGAAtaagttgagtgcaaaagtttgtgccccatGTGTTACAGGTGTTAAAGGAGGATGTacctctattttacaatttatctattaataaaaatgtgtgtatccATGCAGTAACAAGACTACAATCCAAAACATGCAAAATCACTTACATGAACTTTGACTTTTCGTAAAACTTTTCACGATCA

Function

GO:

id name namespace
GO:0005978 glycogen biosynthetic process biological_process
GO:0009749 response to glucose biological_process
GO:0043265 ectoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0004373 glycogen (starch) synthase activity molecular_function

KEGG:

id description
K00693 GYS; glycogen synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328123 lncRNA downstream 16262 4880418 ~ 4881008 (-) True G276753
TU328138 lncRNA downstream 20478 4817108 ~ 4876792 (-) False G276761
TU328142 lncRNA downstream 35163 4817108 ~ 4862107 (-) True G276761
TU328127 lncRNA downstream 52899 4801907 ~ 4844371 (-) True G276755
TU328136 lncRNA downstream 55516 4817108 ~ 4841754 (-) False G276761
XR_003403297.2 lncRNA upstream 25769 4943549 ~ 4945278 (-) True LOC113531850
TU328390 lncRNA upstream 189100 5106880 ~ 5110968 (-) True G276980
TU328395 lncRNA upstream 206693 5124473 ~ 5125478 (-) True G276985
XR_004579974.1 lncRNA upstream 398127 5315907 ~ 5326714 (-) True LOC117599571
TU328476 lncRNA upstream 438120 5355900 ~ 5358204 (-) True G277065
XM_026912198.2 mRNA downstream 104473 4784128 ~ 4792797 (-) True psmc2
XM_026909919.2 mRNA downstream 553725 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA downstream 553725 4331260 ~ 4343545 (-) True LOC113523868
XM_026909970.2 mRNA downstream 836756 4044706 ~ 4060514 (-) True cd36
XM_034313185.1 mRNA downstream 951969 3919302 ~ 3945301 (-) True kdm7aa
XM_026922781.2 mRNA upstream 7936 4925716 ~ 4938813 (-) True ldhba
XM_034313267.1 mRNA upstream 36511 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA upstream 36511 4954291 ~ 4965093 (-) True slc25a3a
XM_026923411.2 mRNA upstream 48452 4966232 ~ 4984301 (-) True tmpoa
XM_026923007.2 mRNA upstream 70701 4988481 ~ 5003791 (-) True strap
TU327987 other downstream 158271 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 310278 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 320232 4576470 ~ 4577038 (-) True LOC117599581
LOC117599444 other downstream 342175 4554619 ~ 4555095 (-) True LOC117599444
LOC117599576 other downstream 352116 4544541 ~ 4545154 (-) True LOC117599576
XR_004579951.1 other upstream 50473 4968253 ~ 4984315 (-) False tmpoa
TU328176 other upstream 52534 4970314 ~ 4972245 (-) False tmpoa
TU329048 other upstream 1063358 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 1064512 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 1115249 6033029 ~ 6033193 (-) True LOC113532437

Expression Profile