RNA id: XM_026922702.2


Basic Information

Item Value
RNA id XM_026922702.2
length 2949
RNA type mRNA
GC content 0.46
exon number 16
gene id slc13a4
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10532781 ~ 10548341 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATGAACTACATACTGGAGGTTTCTGCAGGTTAATTTATGGTGTTTTTAACTTGTATGACTGACTTTTGAAAACCTGCAAATGGCGACGCAGAGAAGAACGCTTAGAAGAGactaaatgagtgtgtgattaaaaaaaaggatctgcCTAATTTCTCTTTAGGGCTGGAAAAGAGGGCTGGTGAAGAACACCTAGACCAAAGGAAAAGCTTTTTGCACTCGGCATTAATGCAACCAAACTCAAGTTTCTTCCAGAAGACAAACTTTACACTTTAGAAGACATGCATAAAGGGAAAGTGCTTTTTGTAGTAGACTAAGTGGCTCAGGAAATTGCATCATATTAGCTATAACCTGAAGAAAAATCACAGCACACGACTTATGCGCAGGTAGTCTCAGCAAccttgaagtggaaaaaaagaaagaaaatcacacCTAAAGAAACCTAAGGAAGCTCAGGTGAGGCTGGAGAATGGATCTGTTCAGAAAGCTGTGGGCGGCGAGGAAGCTGATTCTTGTGGTCATGATCCCTCTGTCCCTGCTGCCTCTGCCTCTCATCCATCCAAGCAGTGAATCCTCCTGTGCCTATGTGCTGATTGTGACAGCAGTGTACTGGGTGTCAGAGGCAGTGCCTTTGGGGGCTGCAGCGTTGGTGCCGGCATTCTTATACCCACTCTTTGGGGTTCTCAAATCAAGTGAGGTAGCCTCAGAGTACTTTAAGGACACGACGCTCCTGCTGATGGGAGTTATCTGCCTGGCTGCTTCTATAGAAAAGTGGAACCTGCACAAACGCATTGCTCTGCGCATGGTTATGATAGCTGGAGCCAAACCTGGAATGCTGGTGTTAGGATTCATGTGCTGCACTGTTTTCCTGTCAATGTGGCTGAGTAACACCTCCACAACAGCCATGGTGATGCCTATTGCTGAGGCCGTGCTGCAGCAGCTCATCTACACCGGCATCGCCGATTCTCACGATGATTCGGATACTGTGGAGACACAAGAGGACGAAAACGATAAAGAGAAGAACTTGAGCAAGAATCACCCTGAGCTTTCAGACTGTGACAACAGTTGTGAGAAACTAGAGATTTACACAGTTTCTGAGGAAGCTAATGGTGTTGCATTGAAGCCAGTTCAGGGAACAGACTTTCCAAAGCAGACTAATGGACATCTACCTGAGGTTTCAGTTGATGTTCCTGTGCCAAAGAAACCCAAAATCAAGAGGGACTCAATGTACCCAACCAAGAGGGACCACATGATATGCAAGTGTCTGTCTCTGAGTATCACGTACGCAGCTACCATCGGCGGCCTCATCACCATCACCGGCACCTCCACCAATCTCATCTTTGCAGAACAGTTCAACAATCGATACCCAGATGCCAAAGTCATCAATTTTGGAACGTGGTTCATCTTCAGCCTGCCTATTGCTCTCATTATGCTGGTGTTAACTTGGCTCTGgctccacttcctgttccttGGATGCAACTTCAGGGAAACTTGTTCTTGGAGTAAGAAACGCAAGACCAAGCGGGAGATTCTCTCTGAGAAACGCATCCATGAAGAGTACCAGAAGCTTGGTGCCATAAGTTATCCAGAAGTTGTGACGGGAgtcttcttcattctgatgaCCTTGCTGTGGTTCACAAGAGAACCGGGATTTGTTCCTGGCTGGACAGTCCTGTTTGAGCAGCAAGGCTACAGGACTGATGCCACAGTCTCTGTGCTGCTTggcttcctcctcttcctcatccctGCACGCAAGCCCTGGCCCTGTTCATCTTCAAGCAGAAGCACAGTGACTGCTTGCGAAGAGGAcaaggaggatgaagaggaagacCCCTTGGCACCCATGATCACGTGGAAAGACTTCTTGAGACTGATGCCATGGGAAATTGTGATTCTGGTTGGAGCAGGATATGCGCTGGCAGCTGGGTGTAAGGTGTCGGGTTTGTCCATGTGGATTGGGCGTCAGCTGGAGCCGATGAGCGGCTTGCCACCATGGGCCGTCACTCTACTCGCTTGCTTGCTCGTGTCTGCTGTGACTGAATTCGCCAGCAACCCTGCCACTCTCACTGTGTTCCTGCCCATCCTTTCTGCTTTGTCAGAGACTGTGCAGATAAACCCCCTGCACACTCTCATCCCCGCCACCATGTGTGTCTCCTTCGGAGTCATGCTGCCTGTAGGAAACCCACCAAACGCCATTGTGTTCAGTTATGGACATCTGAAAATCAGCGACATGGTTAAGGCTGGTTTCGGGGTGAATCTGATTGGAGTTTTGGTGGTCATGCTGGCTATAACCACATGGGGAGTCCCGCTTTTCCAGCTGACGGAGTTCCCTGCCTGGGcagtaatgaaaaatgtaactGAGGGCTTGTAGGCACACGTGGGAAAGAGAGTTGCTGAAATGACAGAAAGGAATGGacaactttttaaatatatgccGCAAGAggcacatttttcttcttctctcattgCCTCTGTTTGTGCTCCTTGTGTTTGCCTCAAAGGAAtgataaaatagataaaatgcCTTGGGAAACATGGGAAATATGAAGACCTCTTCATGGTTACCACCCTTTATTTGAGGGCGATGCAATTTCTCTCAAACTTGGTTttcaaataaatgataaataatgcatttatacgGTCAGTGAAGTTCACAGTTCTTTAACATAGATCAGTGCAGCATTGTGTTGTGGTTTAGTTTCAACCTGTAAATAACGGCTGATGTAGAAAGCGTGGAAGCAGCTTTTATAAGGTGGATGGAAAAACGTGTTCTTTGTTGTATGATCTCACACTGCTACTGTAATTCATTCAAACAACAGTCACACATTGCAACGTTCAAAACGTCATAAATCACTGTAAATACTTGAAACTGTTTCATTATGTACTACATGATAGGACATATTTGCAACTGACATCTTTACaaagcataataaaataataacaacataaaa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14444 SLC13A1_4; solute carrier family 13 (sodium/sulfate cotransporter), member 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332301 lncRNA downstream 19628 10418918 ~ 10513153 (-) True G280384
TU332265 lncRNA downstream 62406 10468686 ~ 10470375 (-) True G280360
TU332320 lncRNA downstream 67151 10463954 ~ 10465630 (-) True G280398
TU332306 lncRNA downstream 96935 10430631 ~ 10435846 (-) True G280389
XR_004579870.1 lncRNA downstream 236583 10255972 ~ 10296198 (-) True LOC113532274
TU332463 lncRNA upstream 228422 10776763 ~ 10777897 (-) True G280527
TU332558 lncRNA upstream 235020 10783361 ~ 10784293 (-) True G280615
TU332595 lncRNA upstream 357832 10906173 ~ 10908630 (-) True G280640
TU332613 lncRNA upstream 382397 10930738 ~ 10930980 (-) True G280652
TU332738 lncRNA upstream 530827 11079168 ~ 11079487 (-) False sobpb
XM_034313222.1 mRNA downstream 20632 10470536 ~ 10512149 (-) False ptprz1b
XM_026923202.2 mRNA downstream 20633 10470536 ~ 10512148 (-) False ptprz1b
XM_026923203.2 mRNA downstream 20633 10470536 ~ 10512148 (-) False ptprz1b
XM_026923201.2 mRNA downstream 20634 10470536 ~ 10512147 (-) True ptprz1b
XM_034313381.1 mRNA downstream 71735 10451578 ~ 10461046 (-) True asb15b
XM_026923330.2 mRNA upstream 70577 10618918 ~ 10629763 (-) False LOC113532144
XM_026923329.2 mRNA upstream 70577 10618918 ~ 10629763 (-) True LOC113532144
XM_026922785.2 mRNA upstream 235987 10784328 ~ 10828385 (-) True ptprb
XM_026923231.2 mRNA upstream 282545 10830886 ~ 10885436 (-) False ptprr
XM_026923230.2 mRNA upstream 282545 10830886 ~ 10885436 (-) True ptprr
TU332243 other downstream 236660 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 910162 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1324218 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1723443 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2313101 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 446764 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 690594 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1037963 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1109549 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 2032582 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile