RNA id: XM_026922739.2


Basic Information

Item Value
RNA id XM_026922739.2
length 2963
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC113531821
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11012219 ~ 11028405 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatcagctaattaaaacTGTCCTCATTGATTGAAgttgggtgtgttagagcaggaaacacTAAGATGTGCAGGATAaaggggttctccaggaccagggctgggaatctgtgatctacacacaataatccaCAATGACAAATCATGGGGGTGAATGATCTGTGGTCAATCCTGAGTCCGGTGAAGGAATCTGTCCCGTTGTACAGTCTCACGGGGAAAACTCTGGCTGTGGATCTCAGTCTGTGGATCTGTGAAGCCCAGCACGTCCAAGCCATGATGGGCAAAGTAACAAAACCTCATCTACGCAATTTGTTTTTTCGTGCATCTTCCCTCCTTCGGATGGGCATCAAGCTGGTTTTTGTTATGGAAGGAGAAGCTCCCAAGATTAAGGCAGAGACTATGAGCAAGAGAACAGGGATGGCCTTCCCTGGAAGTAAAACCAAGAGTGTCCCGAAACCAGCAACAGCCAAAAACACCAGCAGAGGACGCTTTAAAGCTGTGCTTAGAgagtgTGCTGAGATGTTAGACTATCTAGGCATACCGTGGGTGTCTGCAGCGGGTGAGGCAGAGGCGATGTGTGCGTTTTTGGATGCGCAGGGTTTGGTGGATGGCTGCATTACCAGTGATGGGGATGCTTTCCTGTACGGCGCACAAACTGTCTACAGAAACTTCAACATGAACACAAAGGACCCTCAGATAGACTGCTATAAGATGTCCAGAGTTGAGACGGAGCTGCAGCTGAAGCGAGAGACACTCGTGGGCCTGGCTGTGCTCCTTGGCTGTGATTATATACCTAAAGGTGTTCCAGGTGTCGGGAAAGAACAAGCTCTTAAATTAATACAGAATTTAAAAGAAACAACTCTTCTTCAAAAATTCAGTGATTGGAGGAAATCTGATTCCGAGACTCAGGAGTTTGCTGTGAAGAAGGTCACCCACTGCCTGGTGTGTCGGCACCCCGGTTCTGCTAAAGCTCATGAGCGCAGTGGCTGTGTGTTCTGTGACAGTGAGAAGTTCTGTCAGCCTCAGGACTATGACTCGCAGTGTCCCTGTGACTGGCACCGCACTGAGCACGCTCGCCAGGCCTCTTCTGTCGAAACAGTCATCAAAAAGAAAACCCTGGCCTGTGATATGTTCCCTTTCACAGAGATCATCAATGAATTTCTGGTTCCAAAGGACAAAGCTGTTAATAGTTTTAAAAGACGGAAACCCAACCTACTCCTCATGCAGAATTTTGCTCTGGACAAGATGGAGTGGCCCAAACATTACACCAGCGAGAAAGTTCTTGCGCTGATGACCTACACTGAACTTATGAACAGAAGTCAAGGGACACAATCATCAACACAGATACAACCCATTCGAATATACAAGCGGCGCATAAGGAATGGTATCTCCTGCTTTGAAATCATGTGGCGTAAACCAGATCATTATGTATTTCCTGAGGACTGCCCTCAGGAGGAGTCGGATGTAGTGAGGACTGTGGAAgaggaaaacctgtttactgtGGCTTTCCCAGACATTGTCCAGCTCTTCCACAAGGAAACAGCAGAGGCCAAGGACAACAAATTAAAGAAAAAGAAACCgaaggcagagaaagagaagccAGTTGTTTCTTCTGATGGAGTGTCCGATCTTTTTGCTCAGATGTCACTGAAAGGTTCTTCACATCCTGACCCCCTCGTATCCTCAGGGAAAGACTTACGGACGATAACTGTATTAGAGTCTGATGCTGACCACTGTTCCACTGCCACACTAACTACTGCATCAAAACTCACTAAACACTCTAATTGTCATGAAAACCAGTCAGCCTCTGATGCCCCTCTCTCCTCATTTAGACAACAACCAGAGGTTCTAGCTTCACCCTGCCATACAGAAACATTATCACAGGCCCAGAGTTCCCTTTCAGTATCTGTAGTGATTGATCAGCTTCACTTGAGTAGCATAGACTGGGATGCTTTGTCCTTCACTGCTGCCCCATCTCCTCAGTCTCAGCACAGTAAAGCTGATCCTCAACCAGAGAACAAATCAGACGATGGAACCAAAATTGAAGGCCGTGGCTCATCTACTGCTGTTCAGTCAGATTGTGTAGAATTAGCAGCTCCAAAGACTGACCAACTTTCAGAGTGTTCACTGAGGGAACGAGTCCATTTGAGAAACATCATGAAGTGTTCTGGTTCTCAGAATAACGAAGAGAAAGAATCCAAAGTTCAGAGTGTTGGTTCTGAACTCAAATACACTGATTTAGGTCACAAGCCATTGTCTGAGAATCCTAAACTACCAGATCACTCATGGTATCAAAAATCAGGGCGTAGCAGAATTAACACTTTAGCTCCTGATTCAAAGGATAAAACATTCCCAAAAACACAGCGGTCCAAAGATTCCTGCCCTGTCCCAGTGCCACTGAAATACAAATTTGTTAAACCGAAACACTTCAACAGACCATCCATCGATCCTGAGCAGACAAATAAAGAAAGTGCATGTAAGAAGAGTGTTTGTAGAAGACAAGGTTCTTCCAGTGATGACAGTGACGTGGAGAATCAGCCCCTaaccaaacaacaacaaagcaaaCTGAAAGCCAATCTCAAGCCTAAACCTCGGATTGTACAAAAAACTGTCCTAGCACAACTCGTTAAACAGGACAACAATATGTTTTCAAATTCTGTAGACACACATCACGGGTCAGACTCcacaacccctgaaaaacaaccacACAATATGGGCTTCTCAAGAACAAATCCCATAACACAGACATGCAGCAAAAAGAGTGATGATGAATCAGACGCTTCGATTTGTAGCCCTTTGCCACTAGCAGAGAGGCTGAAACttaaatttaacaaataaaaataatgcatttagtCATTGCTAATATATGTAATCTgactgtttttaataataattgattgTAACGGATTATCATTGCATGTTTGTgcaaaaaatgtgcattttaataaagtttggGTTGCAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332613 lncRNA downstream 81239 10930738 ~ 10930980 (-) True G280652
TU332595 lncRNA downstream 103589 10906173 ~ 10908630 (-) True G280640
TU332558 lncRNA downstream 227926 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 234322 10776763 ~ 10777897 (-) True G280527
TU332265 lncRNA downstream 541844 10468686 ~ 10470375 (-) True G280360
TU332738 lncRNA upstream 50763 11079168 ~ 11079487 (-) False sobpb
TU332792 lncRNA upstream 141481 11169886 ~ 11172446 (-) True G280812
TU332799 lncRNA upstream 151526 11179931 ~ 11182051 (-) True G280817
TU332800 lncRNA upstream 154661 11183066 ~ 11184143 (-) True G280818
TU332834 lncRNA upstream 231386 11259791 ~ 11259991 (-) True G280841
XM_026923658.2 mRNA downstream 2587 11008342 ~ 11009632 (-) True msgn1
XM_034313264.1 mRNA downstream 5076 11000009 ~ 11007143 (-) False si:ch211-51e12.7
XM_026923253.2 mRNA downstream 5076 11002165 ~ 11007143 (-) False si:ch211-51e12.7
XM_026923252.2 mRNA downstream 5076 11002165 ~ 11007143 (-) False si:ch211-51e12.7
XM_026923839.2 mRNA downstream 37523 10941118 ~ 10974696 (-) True LOC113532419
XM_026923528.2 mRNA upstream 6679 11035084 ~ 11050606 (-) False agbl5
XM_034313318.1 mRNA upstream 6679 11035084 ~ 11050606 (-) False agbl5
XM_034313319.1 mRNA upstream 6679 11035084 ~ 11050598 (-) False agbl5
XM_026923530.2 mRNA upstream 6679 11035084 ~ 11050598 (-) False agbl5
XM_026923532.2 mRNA upstream 6679 11035084 ~ 11050265 (-) False agbl5
XR_004579975.1 other downstream 5076 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 716098 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1389600 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1803656 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2202881 8809220 ~ 8809338 (-) True LOC113532431
TU332827 other upstream 210530 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 557899 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 629485 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1552518 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 4145943 15174348 ~ 15177613 (-) False LOC113531972

Expression Profile