RNA id: XM_034313034.1


Basic Information

Item Value
RNA id XM_034313034.1
length 2245
RNA type mRNA
GC content 0.51
exon number 11
gene id parpbp
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5464313 ~ 5487007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTGACGTAGTTTAACGTGATTGGTTGAGCTGTGTTTTCATGTCGATTTAAATTTTCAGACGGCGTTCAGGTTGGAAATCACAGTGTCAGAGTTCAGAGCCGGACTTCTCCTTGTAAGCTGCATCAGTATTTCTGAAATTGGAAAAGCAGGAAAATGGGAATTGACCAGTTAAACCTAAAAGCCCTGATCAGAGTTTTTAGGAGAGAGTGTCACCGGGTTTTGGACTCGGAGAGGACCACAGTACATGGAGCGGACAGCATGCTGATGGTCCTCCAGCTGGCCGCTGCTGAGGTCCACAAGCAGGAAAGAGGAGAGTTCGGTGTGGCTTTGAGCGACGTGCTGGAGGCTTGGAAATGCTTGCTTCTGGACAAGCTCCACCTGTCCCGCGACGGCTCCCCACTCCCCGAGAATTATGAGCTCATCCGGAAAGAGTACGACGGCTTTTTGAAGCGCACCAACACGGTGGACCTGATTGATGTCTATAACATGTACGAGGAGCTGAAGCGGGATGAGGACCCCGAGGATCCCCTAACTGCATCGCAGATGTTCGACTTCCTGCTGGGCAGCACGGAGGACGCAGAAGAAGCTGAGACGATTCCTCAGGTTCCAGCTACGCCATCGAACCGGGTCAGAACCTGCAGCGCACAGGTGCAGCGAGCAGTCCGGAGGCTCTTTTGCTCATATATGTGTATGCTGGTGAACACGAAGAACGACTTGGCCCTCGCGCACACTTTGAACACCCCCAACCGCTGTCTAGGGCGCACAGCGTTTACTGACCTCAAACACGCAGCACGCAAAAGCAACACATCTCTATTTCTGGCAGCAACTTCGTTTATCCGGGCGATAGAGCTGGGTGGGAAAGGCTATGCCCCTCCGGAGTCTGACCCTTTAAGGAAGCACTTAAAGGGTTTGTCTCTGTTTGTCCATTTCATGGACCAACTGGAAGAGATCCTGGGAGAAACCCCTAACCCCAGTGCTGCTGGAGGCCGGATGGTGTCCAGCATTAGAGCGGTTCTCCTGAAGGGTCTCAGTAGCGCTGTTCCAGTGTACACCACTGTAGAAGACACGGTGAAGGACCTCAAGGAAAGAATCCACCAAATCCACACCCTTCAGAAAGAGTCCACTTGCGGCACAGGGATCAGTCCAGCCAGGCCCAGAACGTACGCCATCAATCACGCCACTGCCTATGCAGGCAGAGAGACTGTTAAAGTCCTGATCACGGTGTTGGATGAAGAAGCACTGGCGCCGCCCTGCAGGAACAAAGCACAACTGCTCACTGATGATCAGACTGTTCTGAATGAAGCTGAGCCCGTGTGTCTCCTCTCGCTCTACACATCTCCAGAGGTTCCCACAGGGCTCTCTCCAAAGCCCTTGTGCAAGCGCATCCAGAGCCAGCAAGAACACGTTAAGTCTAAGGTAAGGGAAAGAGGCATCCGTTCGCAGTTTGCCTGCACGTACATGGACGATGGTCTGCCTCTAAATCGTGTGCTGGACTTTCCCAGCACGAGTCAGCTCCCGACCTGTGTTCATCCTGCTCCTAAACAGACAGTCCCCTCAGCTGTTAATGCGCCCCATGAGGACGAGTTTGACCCTGCAGACAGATGCGAAAAACAAGTCGAGGTGGATCAACAGGCGGCGATTCTGGCCTGCCGTGGCTCAGGGACCAAACCAGCCCTCAAGCAACGCAACACCAACGGCCCAATCCGAACAGGTGTTTCAAGGAAAGGAGTGGCAGAACTCCAAACCATCACCAAAACTTCCAAGAGGAAGCTGTCAAACAGAGAGTGTGTGGAACAAGGAGGTGATGAGAACCAGCCGCCCCAGAAGAGACCTCCTGCCAAAGCCTGTAGCTCAGGGCCAGGGAAGAAGAGCGGCAGCATGGCTAGAAAGAAGCTCATTGCCGGTCAGGGCAAGCTTACAAGCTTTTTCCGGCTATGATTTAAAGCTTATATGGGATGCTTCATCATGACTTCTCATGTCCTCTCTAATCATGTCCTTCatctgagtgtgtgatgagtatAAATTAGAACTTTAGACATGCATGTGAAGACTTAGACAATTACTTTCTGATTAAACCCCTATGGGGATCGctatttaattaatgcattgAAAACCTTTACATGCAGTTTTATAACATAGGCATCAATCATTTCACAATGATCATGCattgttcagtttatttttagtcAAACAAGTGCATCATTTCtggttttaataaagttttatttaactgTACAACATTT

Function

GO:

id name namespace
GO:2000042 negative regulation of double-strand break repair via homologous recombination biological_process
GO:0000785 chromatin cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328891 lncRNA downstream 15626 5447151 ~ 5448687 (-) True G277443
TU328477 lncRNA downstream 105085 5358451 ~ 5359228 (-) True G277066
TU328476 lncRNA downstream 106109 5355900 ~ 5358204 (-) True G277065
XR_004579974.1 lncRNA downstream 137599 5315907 ~ 5326714 (-) True LOC117599571
TU328395 lncRNA downstream 338835 5124473 ~ 5125478 (-) True G276985
TU328897 lncRNA upstream 72931 5559934 ~ 5560268 (-) False G277447
TU328898 lncRNA upstream 72931 5559934 ~ 5560322 (-) True G277447
TU328954 lncRNA upstream 171481 5658484 ~ 5727420 (-) False G277494
TU328966 lncRNA upstream 174808 5661811 ~ 5663019 (-) True G277506
TU328968 lncRNA upstream 182565 5669568 ~ 5670534 (-) True G277508
XM_034312990.1 mRNA downstream 45256 5405474 ~ 5419057 (-) True casc1
XM_026923526.2 mRNA downstream 102334 5339773 ~ 5361979 (-) True bcat1
XM_026923350.2 mRNA downstream 275798 5080812 ~ 5188515 (-) False sox5
XM_034313041.1 mRNA upstream 27079 5514082 ~ 5528820 (-) True th2
XM_026923147.2 mRNA upstream 42153 5529156 ~ 5550953 (-) True pah
XM_026923579.2 mRNA upstream 78674 5565677 ~ 5625699 (-) True LOC113532275
XM_026922794.2 mRNA upstream 297907 5784910 ~ 5790989 (-) True si:dkeyp-38g8.5
XM_026922873.2 mRNA upstream 502189 5989192 ~ 6005129 (-) True copg2
XR_004579951.1 other downstream 479998 4968253 ~ 4984315 (-) False tmpoa
TU328176 other downstream 492068 4970314 ~ 4972245 (-) False tmpoa
TU327987 other downstream 725314 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 877321 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 887275 4576470 ~ 4577038 (-) True LOC117599581
TU329048 other upstream 494135 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 495289 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 546026 6033029 ~ 6033193 (-) True LOC113532437
trnam-cau_46 other upstream 616073 6103076 ~ 6103147 (-) True trnam-cau_46
trnal-aag_11 other upstream 2106724 7593727 ~ 7593808 (-) True trnal-aag_11

Expression Profile