RNA id: XM_026922785.2


Basic Information

Item Value
RNA id XM_026922785.2
length 8269
RNA type mRNA
GC content 0.47
exon number 31
gene id ptprb
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10784328 ~ 10828385 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATTTGTCAGACATCTAATAAAAGGGGGAAAAATCCTAGTCCAGCATTTATGTTAAAGAAAAGAGCTAAATCAAGCCTGAAAGAAGCTTTGGATTTTAGGAAAGAAGTATCCTGAAGTATCAGAGAGACAACGCCTCActtattgtcattgttttacTTGGCCACTGAATTTGAACTTAAGACCGATCCTGATTGAGGAAATCCGCTAGAGACTGAATGGTTTACTCACACGCATTTTTGATTACCATTAGCCGATGAGTGTGAGAGGCTCCGACAGAGGCCCAAGTGGATCTGATGAACTTTTGGAAAAATctcttttaaacaaatatatccAACGCATGGGGAGATTACATTTCCACTCATTTCCAAATCCTTTGGATTATGTTTTCAAGTGTCTCTTCAAATTGAAGTTCTATTTATTAACTAAAATCATCTAATAACCTGACAATCGAAAATGCTGAGACCTGAAGCTGTTTCTGTAGCCATCTGGGTAGCATGTGGAGTTATGggtGTGCTGCTGGCCGATACTCAGCAATGTAGCATTAAAGTTCTCAAGACCTTCCAAATCCGCACCGATTCTATACAGCTCACACTGAACAACTCAGATGTGGATTGCCAATTCAGAGTGAATATTGCGGACAGGCCTGAGAACTCAACAGACTGTGATCAAGATCAAGAAAATTGggaaatgactaaatgtaaacTTGTGAATTTGGACCCTGGAACATGGTACCACCTGACTATAATATCGAAGACAGATAGTAATCAATACAATGTGTCCCTTCCCACAAGACCTTCAGCAGTGCAAAGTGTTCAGATGTTTAGACATGTGGATAGCCTGAGTGTGTCCTGGAAGCCCGGCCCAGGGAGAACAGAGCAATTTCGAATTCTTCTCCGAGACAGCGCAGGTCTGGGCTCTGTCTGGAACGCCACGTTGGACAACGTTACAACTTCATACACGGTGAACGGCCTGACTCCTGGTCGTGTGTACAATATGAGCATCATCACCGAGGCAGCAGGGATGCAAAACGCCGTGTCGGTGCAGGAACAAACAGTACCAAGCACGGTCCTTAATGCACATATGGAGAGCAATGGGAGTCAGGCAAGCCTCCAGGTCTCCTGGGATCAAGCGCCTGGTGATGTGGACAGTTACCTGGTCCAGCTACTGTCTTCTGATTCAGCTGTGCAGGAGCAAATTCTGTCCCCAAACACCACCCAAGCTCAGTTTGACCGTCTGACACCTGGCAGCACCTACCAGGCCTTGATCTACACCAGGAGTGGTGATCTCAGCAACCAGGTCAATGTGACTGCTACAACCGCTCCAGGCAAAGTCTCTCAGCTGAAGATGGAGAAGCCTGCAAAGTACAGCGACGTGAAAATTAGCTGGCTGCCCCCTGTAGGACACTGGGAACGCTACAGCGTGACGCTCTTTAATGGCAGCGAGGCGCTGCTTAACACAACCCTACATAAAGCTGCGACAGAGTTCAGATTTTCTGGGTTAAATCTTCATCCTGGAAGAGTTTATAAAGCAGCAGTGAGTGTGGAGAGCAGAGGGCAGAGCAGCACCGTCTACTGCCGTGCAGAAATAGgtcCACCACCTGTGTCACAGCTACACATCCGTCATGCAGATGAGACGTCCCTCAGTGCTTTATGGAACCACAGTTTTGGCTCAGGGTCTCGTGACGGCTACACTGTAGAACTTTACTATGCCACTGGTTCCACTGCCATTCAGACGCGAAGGCTAACCCGGGACATGAGAGAGTGCACATTTAACGTGCTCGTGCCTGGCCGTCTGTATAAAATTGTTGTGATAACCACCAGTGGAGACCTCCGCAGTTCTGCTGCAGTGACAGGAAGGACATTGCCTCATGAAGTGACCTCCCTGAGGCTAAACAATATGAGAACCACAGACTCTCTCAGTGCCACCTGGGACAGACCTCAGGGAGATCTGGATTCCTATCAAGTGCTGCTGCTACACAACCAAGAGCCTGTGTATAACCTCACCATCCCAGCTAACACAACCATTATCCACCTCCCGCATCTCAAATCTGGAGCATTTTATAAACTGCTGATTAGCACAGTCAGTGGTGAACAACGATCCAAACAGGCTGAGGCCAACTGCCACACAGTGCCAGCAGCCGTGGCTGAAGTAACGGTCACGAATGATGGACGTCCAGATTTCCTCAATGTCTCATGGAAAGCTGTGCCAGGAGATGTGGACAATTATGAGGTCAACCTGAAGGACCGGGAGCGGATTGTATACACGCTCACTGTGACCAAACTGAGCTCTGAATTCAGCAGCCTTGTGCCGGGACGACTGTATACCATCTCCATTAGCGCCTGCAGTGGCTTTTACAAAAACACCACTGTCGTCCAAGGAAGAACACAACCGTCTGCAGTGCAGAACCCCAATGCCATCCATTTAGCCCGAGAAAATGTCCTGAAGGTGTACTGGAACCATGCAGCTGGAGATTATGACTATTACAACGTAGCAATCCTGCACAACAACACACTCCTTCAGAACCAGACAGTGGAGAGGAGCCGgaacgagtgtgtgtttagtaatcTGGTGCCTGGTCGACTCTACAGGCTCACTGTCAGCACCTGGAGTGGAGAGTACAAGTCCAGGATTTCCACTGAAGGACGTACATTTCCCGCTGCAGTACGTTCGCTGGCCCTGTCCCAGAAAGGAACCACTCATCTGTGTGTGAGCTGGAACTCTGCACCAGGAGACGTGGATCACTACGAGCTCCAAATCCTCTACAACGACACAAAAGTTTTCCCAGCCATGAGTCTTAACAACACAGCGCAAGAGTACTGCTTCTCTCCACTCACCCCAGGCTTTCTCTACAAGATTGTGGTCTCCACCATCAGCGGGTTGTACCTACAGGCCCAGCGCATAGAGGGCCGCACCGCACCCAGTCAGGTTAAGAACCTCCAGCTCCTCCCTGGGACACTCAGTGGCAGTCTCAGAGCTTCCTGGAGTGCCGGCGCAGGAGACGTGGACTTCTACACGGTCTTCCTGCTCCAGAATGCACAGGTCGAGATCAACCGACGTGTCCCTAAGCAGAACAACAGGACAGACTTTGAAGATCTCGTACCTGGGCAGCTGTACACAGTTAGAGTACAGACAGTGAGTGGAGCACTGACTAACGACAGCACCGTCAGCGGACGCACAGTTCCTTCGCCAGTGAAGGGCCTCCAGGCTGACAgtgaacacaccacacacagccTTGCTGTTAGCTGGGATGCGCCAATGGGTGTGTACGATGGTTACAGTGTTCAGCTGTTGGATGAGGATGAAGCCATGGTAGCCAATGTTTCAGTGCCTGCAGGCATCACACATTACCTGTTTGAGGGTTTGGTCCCAGGACGAATCTACACTGTGCATCTTAAGACCTTCAGCAACACTTCTCACAGCAAGGACGTCACAGCAAAAGGGCAAACACGCCCGGCAGCTGTGAAAGGTCTCCATCTGCTTTCAAACAGCACCGCTGAGCTCTCATTCGGCTGGAATGTGTCTGAAGGCTGGGTGGACCACTACGACCTCCACCTGTACAGCCCGGACAATATTCTCCAAGAACACAAGAAAGTGGGGGCAAAAGAGAGAAGCTGCATTTTCCCTCACCTGCTTCCTGGGACACTTTACAAGCTGGTGGTGATAAGCAGGAGCAGAGGAATGAGCAGCGAGTCTTCTCTGTGGGCGCGCACAGtccctGCCCCAGCTCGAGACTTGCAGATTGATCATGAGGGTCACACAGACAGTCTATTGCTGAGCTGGAGACGTGCTCCTGGGAGTCTGAGTGGATACATCATTTCTCTGGAGGGCTCGGATCAGCCGGAACAGAGACTGGGACccgaacacactcacacaatctTCACAAACCTTCTGCCTGGTCGCTTATACACTGCTGTGGTGCGCAGCTGGAGTGGAGAGCTTACAAGCACTGTGTCTGTAGTAGGGCGCACAGTTCCTGAGCCACCCACGACTCTGACCATTAAAGATGTTGGCCCTGTTGGCACGGTGGAGGTGATCTGGCATGCTCCTGCTAAGGGCAACTATGATGACTTTGAAGTAAAATGGCTGCCACGAGATGTGCTGTACATGTCCAAACCAAACCCAATGCGACGCATCATTTCTGGTCTTTACCCTGGCCGGCTGTATAACATCAGCCTGTCCACTGTGAGCGGGGGAACACCAGGGCCTGTTGCCTACAGCTCAGCTATTTACCACTCCATCCGCACAGCTCCAGGACCAGTCCAGAGTTTCCACTGTCATCCCCTGAGCTCGAAGTCTCTCTCATGCTCCTGGAAGCCTCCAGCATCTGATTACAGCTCTTACTTCATGGAATGCAGGAGGCAAGGCTCGAAAGTGCCTGTGTACAATTACACACTGAGTGCTAATACCCAATTTCAGCACTTTGACAAGCTGGAGCCTTTCAGGAACTACACAATCTCCGTTACAGTGATCTCTGGAGACAAGAAAGGTGCAGCCGTCCAGAACAGCACCTTCACCATGATCGACCGGCCACCGGTGCCTCACCCCACAGTACGCATCAGTGAGAGAGCAGCCCACATCACCCAGTCCACCATTTTCTTCAAGTTCAACTGTAGCTGGTTCAGCGACACCAACGGGGCCATTCGCTACTTTGCCGTCATTGTAGCCGAGGCTGATGGTGTGGAGCCCGTGTTGCCAGAACACAGGCATCCTCTGCCCTCTTACCTGGACTATAAGCGCAACAGCTCAGTATTGGCTTACCAGACCAGCTACTTTCAGAGCCTGTGTGGAGATGAGATGGATTCGGCCAACCGGGTGTTTGAGATCAACCTCGGGGCCGGGATGGACCGTCTGGGAGGAGCTTGTGAGCAAGACATGGAGCACAAACAGCAGGGGAACTATTTCTGTGATGGACCCTTAAAATCCAGAACAGCCTATAGGCTGAGTGTCCGAGCCTTCACCCAGCTCTTTGATGATGAGAACAGGGAAATGTCTCATCCTCTGTTCAGCGACACCTACCTCTCACTCCCACTTTGGACACAAGCAGAGCCGCTGGGAGGCGTCGTCGAGGGCATCAGCGCCGGCTTGTTTCTCATCGGGATGATGATCGCTGTAACCGCCTTACTGATCTACAGGCAGAGGGTCCgcaaagtagcggTGCAGGAAAGCCCTCTGGTGAGGATGAGTATGTGGAAGGAGGTGCCCACTTCAGGGATGTACATGGGGGTCAGAAGCAACCGCCGCTTATCCAGccCCATCAAAGCAGCCCACTTCGAAGCTCATCTAGGTAAACTTCAAGCCGACTCCAATTACCTCCTCTCAGAGGAGTTCGAGGATCTCAAGGATGTGGGACGGAACCAAGCTCTGGAGGCTGCACGTTTACCCGAGAACCGCTGCAAGAATCGTTACAACAATATACTGCCATATGACTCAACCCGCGTGAAGCTCTCATGCTTAGAGGACGATCCATGCTCGGACTACATCAATGCCAGCTTCATGCCAGGAAATAATTTCAGGCGGGAGTACATTGCCACGCAGGGGCCACTCCCAGGCACCAAGGATGATTTCTGGCGCATGGTGTGGGAGCAAAATGTGCACAACGTTGTCATGGTGACGCAGTGCGTTGAGAAGGGCAGGGTGAAGTGTGATCAGTATTGGCCAGTGGACAGGGAGCCACTGTACTATGGTGACCTCGTGGTCCACATGCTCTCTGAGTCCGTCCTGTCAGAGTGGACAATCCGCGAGTTCAAGATATTCTGTgAAGGCCAGCTGAGTTACTCGAGGATTGTGCGTCACTTCCATTACACGGTGTGGCCGGATCATGGCGTGCCTGAGACGACCCAATCGCTCGTTCAGTTCGTGAGAACTGTGAGAGATTACATCGACAGGGTGTCAGGCTCTGGCCCTACAGTGGTCCACTGCAGTGCTGGTGTGGGCCGTACAGGCACTTTCATCGTGCTCGATCGTTCTTTACAGCAGCTGGATAGCCGTGGCACCGTCGATATTTACGGCTGTGTGTTCGACCTGCGGCTGCACCGCTCACACATGGTGCAAACCGAGAGCCAGTATGTGTACCTCCATCAGTGTGTGCGTGACGTTCTGAGAGCCAGGAAGCTTCGCTGTGAGCAGGAGAACCCACTTTACCCCATATATGAGAACTTTAACCCTGACTACTACAGAGATTTTGTGTACACTGGAAAGTGAGGACTGCAGACCACTTGACAAATCACAGGAGAAGGAATTGCCTCTGgacattaaatctaactttaATAACTAGTGcacttcactgcaaaaaaataatatctcAGCAAGTGCAAATATCTTTAATATGGGTGCATGCTTTTAGATGCTTTCTCTCATTTTAAGCGTTGACTTTTCTTATTCtatttgcttctttctagaaataaatgcttaaatttTAGATAAAAATGATCTGCAAATAGCCTGAAGCTTGAAATTGGTAAAATacatctagaaataggtttaattaTCTTAAATTTGGTTTACCGTAgtcttataataagaaattcTAGATACATTTGAGtatattaaagacattttcacttgctaaaatgtcatttttttgcagtgcacagggatatagcatttattttttatacaaccTCCTCAAGCCGTATTTAAAGTGTTAACATTTGTTTATGGATATTTATGTCTTTTATCAATTTTATACTTTAGTCAATATAGGCACCTAGTCTTCCTATAATTCTTTCTCATGTTATTATCTCCTTCAGTTAATTGTTTATTGGAAATTGAATTTACCTTCATGCTTTAATGTGAAGCAGACTGAACTGACCTTTACCGTTTATCTGATTGGTGATTGGGAATTGGTAAATTACCAGATTGAGAGAAAGCAGGGTGAAAATTGAATTGTTTTTGCATCCCtaatatgattttatttgaatagGAATTGCTTAGAAAGCAATAGTAATCTTTGTAAATAAGGCTACACATATATAGCCTTAGCCCTGTCCCTAAACAACCGCATATGACCAGCACTGTTGAGAAAAGCACTGCTTTCTGTCACACTGTCTTAGAAAAGGTTAAAGGTAAATGCGAGCGAGATTATGACAGCTGAATCCAGAAAGCCATCAAATCTGCTGTGGATTTACAGGGAACAACCCCGAAGTCATGGGTGTTTCAGACCACATACCTCCATCCAGCTTGTCTGTCAGCATTCTCTGTGCATCTTCCTATATATTCTTGCAATCACTGAAATTATAGCTAGAAAGAATgctataaaagctataaaatgacttctttcatttgtttctttccatttctcttGCCAACTTTGCATTTGTCATGGCACGTTTACCGAAGGTTAAACTTCTACCATCATTTGCATCCCTTTTATCAGACAAAGCACGTATAAGAACACACTCTGAGCAGtttcatgcatattcattatattttagtataaacagTATTTCGTTACGTTCAGTAAGGAAATCGTGCTCGCTCGTGACCTGTACCAGAGCTGGCTTTAGTTTATGTTGCTTTGGGAGCTTTTATCTTTCTGACTCATCAAAGGCACCAACACGGGAAAAACGCAATGAGTCCAAACAGACAACAGTTTCTGCCCCAATCTACATCAAACACATCTGACAACGTCAGCCTAATCTAACCAGGATTTCTGACCTTGATTCAGATCTGTATGTAAAGTCTGATCTCAAGATGAAAGCACTTAGATTAAGTGATTGATTAGATCTGAATAagtctaaataaataagcacTTTTTATTCCTATGGACCTCAAAACTGTGACATGAAATAATGTGCTAAAAAtcactgcactgcaaaaaaaaaaaaaagatgacttaGCAAGTACaaaaatcttgaatatagtcaaagtTATCTAgtttttcctattataagacttgaacaaaccaaatataaaattattaaacatatttgttATTGATTTCAAGCTCAAAATTAGCAGTTATCTGCTACTAggacaagactatttcaagctcgAAATGAGTAACAATGGCTAGAAatgggtttaataatcttatacttggtttattttaatgttataatagtaaatactacagtatattcaagatattcaaGACATTTCTGCAGTGTATTTACTGTTCACTGGCTACATTACTGTACTATTAACATAAAGTTCGACctccattttaaattctgttgggTTGCCACTACCTCACAGAGCAGAGACGTATTTTGTCAAATTTAAAGCAAGCCTGTCATGTGagtggtatttaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0001568 blood vessel development biological_process
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K05694 PTPRB, PTPB; receptor-type tyrosine-protein phosphatase beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332558 lncRNA downstream 35 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 6431 10776763 ~ 10777897 (-) True G280527
TU332301 lncRNA downstream 271175 10418918 ~ 10513153 (-) True G280384
TU332265 lncRNA downstream 313953 10468686 ~ 10470375 (-) True G280360
TU332320 lncRNA downstream 318698 10463954 ~ 10465630 (-) True G280398
TU332595 lncRNA upstream 77788 10906173 ~ 10908630 (-) True G280640
TU332613 lncRNA upstream 102353 10930738 ~ 10930980 (-) True G280652
TU332738 lncRNA upstream 250783 11079168 ~ 11079487 (-) False sobpb
TU332792 lncRNA upstream 341501 11169886 ~ 11172446 (-) True G280812
TU332799 lncRNA upstream 351546 11179931 ~ 11182051 (-) True G280817
XM_026923330.2 mRNA downstream 154565 10618918 ~ 10629763 (-) False LOC113532144
XM_026923329.2 mRNA downstream 154565 10618918 ~ 10629763 (-) True LOC113532144
XM_026922702.2 mRNA downstream 235987 10532781 ~ 10548341 (-) True slc13a4
XM_034313222.1 mRNA downstream 272179 10470536 ~ 10512149 (-) False ptprz1b
XM_026923231.2 mRNA upstream 2501 10830886 ~ 10885436 (-) False ptprr
XM_026923230.2 mRNA upstream 2501 10830886 ~ 10885436 (-) True ptprr
XM_026923233.2 mRNA upstream 2501 10830886 ~ 10854584 (-) False ptprr
XM_026923232.2 mRNA upstream 2501 10830886 ~ 10854584 (-) False ptprr
XM_026923234.2 mRNA upstream 2501 10830886 ~ 10853591 (-) False ptprr
TU332243 other downstream 488207 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1161709 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1575765 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1974990 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2564648 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 166720 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 410550 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 757919 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 829505 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1752538 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile