RNA id: XM_026922808.2


Basic Information

Item Value
RNA id XM_026922808.2
length 6712
RNA type mRNA
GC content 0.46
exon number 38
gene id abcc9
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12592087 ~ 12636416 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCCTTGTCATTCTGCGGGAACGATCTCAATGACTCCTACAGCGTCAACAAGGGAGTCCTGAATAACGGCTGCTTTGTGGATGCGCTCAACCTCGTTCCACATGTCTTCTTACTCTTCATTACCTTCCCTATCCTCTTCATTGgtTGGGGCAGTCAGAGCTCGAAGGTGCAAATCCACCACAACACCTGGCTGCACTTCCCTGGCCATAATCTACGCTGGATTCTGACCTTCACCTTGCTTTTTGTGCACGTGTGCGAGATCGCCGAGGGAATCGTCTCCAACACGGAGATGAAGTCAAATCACTTGCACCTTTTTCTACCTGCATTAATGGGCTTCATAGCAGCTACTACATCAGTGGTCTATTACCACAATATTGAAACCGCCAACTTCCCCAAATTACTCCTCGCACTGTTCATCTATTGGGTGCTGGCGTTCATCACCAAAATCATCAAGCTGTGGAAGTTTGCAGAGGAAGGAGTGGGCATACAGCATCTCCGCTTCTGTATCACGGCTCTGCTTGTGCTGCTGTACGGCCTGCTTATGGCTGTCGAGATCAATGTCATACGGGTCAGGAAGTATGTGTTCTTCACTAATCCACAGCGAGTGAAACCACCGGAGGACCTGCAGGATCTAGGTGTGCGCTTCCTCCAGCCTTTCGTTAACCTGCTCTCTAAGGCCACATACTGGTGGATGAACCCACTGATCATGGGTGCTCACAAGAGACCCATCGAACTGAAGAAGATCGGCAAGCTGCCCATCGCCATGAGGGCTCTGACCAACTACCTGCATCTGAGGGATGCTTATGAAGAGCAGAAGGAGAATGCAGAGGAGCTGGACAAGACGCCATCCATCTGGAGGTCCATGTACCGCGCATTTGGTAGGCCCATCCTTCTCAGCAGCACCTTCCGCTACATTGCTGACCTCCTGGGCTTTGCCGGACCGCTCTGCATTTCTGGAATTGTAGAGAACCTGAACCAGGAGAATAAGACTGAAGAATTCAACATGACAAAGACAGAGGAGCTACCTTTTGGCGTCTACTTTATGTCCTCCACGGAGTTGTTCAAAAAGGCATATGTCCTGGCTGTGCTTCTCTTCCTGGCTCTCGTGCTCCAGCGCACCTTTCTACAAGCGTCCTACTACGTCACTATAGAAACTGGCATCAACCTACGTGGCGCACTGTTGGCAATGATCTACAACAAGATCTTGCGTCTCTCCACCTCCAACATGTCTATGGGAGAGATGACCCTGGGACAGATCAACAACCTGGTGGCAATAGAGACCAACCAGCTGATGTGGTTCCTATTTCTGTGCCCTAACTTGTGGGCAATGCctgtgcagATCACTATGGGCGTGATCCTGCTGTATTACTTGTTGGGGTCCAGCGCAATCATTGGTGCACTGGTCATTGTGCTGCTGGCCCCCATTCAGTACCTCATCGCCACCAAGCTGGCCGACACACAGAAAAGCACACTGGACTACTCAACAGACCGTCTGAAAAAAACCACAGAGATCCTGAAAGGCATAAAGCTGCTGAAGCTGTATGCCTGGGAGAACATTTTCTGTGATAGAGTGCTGGAAACCAGGAACAAGGAACTCACCAGCCTCAGGACATTTGCATTTTACACGTCCATGTCCATCTTTATGAATGCAGCCATCCCCATTGCTGCTGTGTTAGTGACATTTGTTACTCACGCATACATCAGCGAACCTGAGAACAAGCTGAGTCCAGCCAAGGCATTCGCCTCTCTGGCTCTCTTCCACATCCTGGTCACACCACTCTTCCTGCTCTCAACCGTGGTGCGATTTGCCGTTAAGGCCCTGGTCAGTGTTCAAAAGCTTGGTGAGTTCCTGCAGAGCGAAGAGATCGGTGATGACAGCTGGAGAAATGGAGACATGATGGTGGCTTATGAGCCCTACAAGAAATCCACTGGGGgtACAAAGGTGATAAATAGGAAGCAGCCACTACGTTATCAGATGGATAACTACGATCAGCCCATGCGCAGGCAGCTGCGCCCCACTGAGACTGAGGACGTCGCCGTGAAGGTGAACAACGGATGCTTCACATGGGGGAGCAACATGTCAACCCTATCTGACATAAACATCCACATTCCTTCAGGTCAGCTGACCATGATTGTGGGCCAGGTGGGTTGTGGGAAATCCTCGCTGCTGTTAGCCATGCTGGGCGAGATGCAGACTCTCAGTGGGAAAGTCTATTGGAGCAATCTTCCTGATTGTGAGATGCTCCATGATGGCTGCATAAGTAAGAACAGGTACTCTGTGGCATATGCAGCTCAGAAGTCTTGGCTGCTAAATGCTACTGTAGAGGAAAACATCACATTTGGTAGTCCTTTCAACAAGCAGAGATACAAGGCCGTGATTGATGCTTGCTCACTGCAGCCAGATATTGATCTCCTTCCCTTTGGGGACCAGACTGAAATTGGAGAAAGGGGAATAAATCTCAGTGGAGGTCAGAGACAGAGGATCTGTGTGGCTAGAGCTCTGTATCAGAACACCAACATTGTTTTCCTGGATGACCCATTTTCTGCTCTGGACATCCATCTAAGTGACCATCTCATGCAGGAAGGCATTCTCAAGTTCTTGCAGGATGATAAGCGCACTATGGTCCTGGTTACGCACAAACTGCAGTACCTCATTCATGCAGACTGGATCATAGCAATGAAGGATGGCTCTGTGTTGAGAGAGGGAACACTGAAGGACATCCAGACAAATGATGTGGAGCTCTACGAGCACTGGAAAACTCTCATGAACAGGCAGGACCAGGAGCTGGAGAAGGACACAGATTTTGAGAGTCAGACTACTCTTGAGAGGAAAACACTGAGAAGAGCCTTCTATTCAAGAGAAGCCAAGAACCAAattgatgatgaagatgaagaAGAGcaagaggaggaagatgaggatgaCAACATGTCCACTACCACCAGCCGCCGTTCAAAAATCCCGTGGAGGGTTTGCTGGTGTTATTTGTCCTCCGGCGGTTTTCTCATGGTTTTCTTGATGATCGCCTCCAAGCTGGCCAAGCACTCTGTCATGGTGGCCATTGATTACTGGCTGGCAGCATGGACCTCCTCAAGCCCAAATAATATCAGTGATTTCATTATCAATCTGGATGCCAACGCCACCAACTACACTCAGGAGTACAGGGCCATGCAAAGTGCAGAGcatCAAGCCTATGTGCCAGTGTTTGTTATTCTCTGTGGAGCAGGAATAGTCCTCTGTCTTATCACTTCTCTGACTATTGAGTTTTTGGGTCTTGCTGCTGCCACTAATGTGCACCATAACTTACTCAACAAGATCATCCATGCACCTCTTagATTCTTTGACGTTACCCCACTTGGTCAAATTCTCAACCGTTTCTCTGCAGACACCAACATTATTGATCAGCACATTCCTCCTACGCTGGAGTCTCTCACTCGATCcactcttctctgtctctcggCCATTGGCATCATCGCTTTCGTTACACCAGCTTTCCTTATTGCCCTGGTGCCCCTCGGAGTGGCCTTCTACTTCATCCAGAAGTACTTCCGGGTTGCATCAAAAGATCTGCAGGACCTAGATGACTCCACTCAGCTTCCTTTGCTCTGCCATTTTTCTGAGACTGCAGAAGGCCTCACCACCATACGAGCGTTCAGGCACGAGACACGCTTCAGGCAGAGAATGCTGGAGCTGACTGACACCAACAACATAGCTTACCTCTTCCTCTCTGCTGCCAACCGGTGGCTAGAAGTCAGAACAGATTATTTGGGTGCTGTTATTGTCCTAACAGCTGCAGTAGCTGCCATCTGGATGTCGTCTTATGGAGTCCAGCCTGGTCTGGTTGGACTCGGCCTAACATATGCTCTTACAGTGACTAATTATCTGAACTGGGTAGTGAGGAACCTGGCAGATCTGGAGGTTCAGATGGCAGCAGTGAAGAAGGTTAATAGCTTCCTGAGCACAGAGTCAGAGAACTACGAGGGTTCCATAGATGTCTCCCAGGTTCCAGAGGACTGGCCTCAGCATGGTGAAATTAAGATCCAGGACTTGTGTGTGAGATATGACCCCATACTGAAACCTGTTCTTAAACATGTCAATGCTTTCATCAACCCTGGTGAGAAGGTGGGCATTTGTGGGAGGACAGGCAGTGGAAAGTCCTCGCTGTCTCTGGCCTTTTTCAATATGGTGGACGTTTTTGAAGGAAAGATCATTATTGATGGCATTGATATCTGTAAGCTGCCACTGCATACTCTGAGATCCCGGTTGTCCATAATTCTTCAGGATCCAGTGCTGTTCAGCGGCTCCATCcgTTTTAACCTGGACCCAGAATGCACCTGCACTGACGACAGGCTTTGGGAGGCTCTAGAAATTGCCCAGCTAAAGAATATGGTCAAAGCACTCCCAGGAGGACTGGATGCAGTAGTAACCGAAGGAGGAGAGAACTTCAGCGTGGGCCAGCGGCAACTCTTCTGCCTCGCCAGAGCCTTTGTTCGTAAGAGCAGCATCCTCATCATGGATGAGGCCACGGCGTCCATCGACATGGCcacgGAGAACATTTTACAGAAGGTTGTGATGACAGCATTTGCTGACCGGACTGTTGTCACCATAGCACACCGGGTTCACACTATCCTGACGGCTGATCTTGTGATCGTGATGAAGAGAGGGAACATACTCGAGTACGGGAAACCAGAGGCTCTGATGGAGCAAGAGGATGGCATGTTCGCCTCCTTCGTCAAAGCAGACATGTAGACGCACTATCCATCAgtacacacctccacacacacacacacacacacacacacacacacactgctgacgtacaaggaaggaaggagttatttcttattttataaacaGGCAGATTTTCCAGTCTGCCTGTGCCTTTGACCTTTTAGTGGATTACATTATATAACTGCAGTATTTGATCCTTTTGGTTcgtgcttcttcttttttacaTTAAGTTAATGATATATGTGTGTTAATATGACAAATAGCAgctatatttactatattaacTGGTACTAACACTGTACGCAGTTGTCAGCACACTTGAGAGCTGACACAACCTGTCTGTCTAATGTGCATTGCTGAATTTTACTCTGGATAATGAAGGGAGACTTCTAGCACCACAGAGGCACAAATTActatgcaaaacacattttttgtatCAAGACGTTATATCCTGtatcattttcctgtaacaaccaGGACTTGCTTTATGGTCTGTTGTAATGAATTAAGAATGTGAATCAGAACTTGTGCTTCCTGGGGATGGCCAGacaacagaaaatattttatttacaatatagaGCTGTATGTTAGTGAGCCTGATTGCTGAAACCAAATTCCAGCTCTAGTTGTAGATTTGTATTTCTGTTCACCTCTCTCATGTTTGTCTTTGCTTTTATTCTCCCTTGCGTCCATGTTCCACACgaacagaaaataatcaaaaacaacCACTGCATCTTTTCTGACTGCTACTCATCAAATGCAAAGCGCACTTGGAGGAGATCCTGTCTGCCTTCTTCCATATACCTGAGTTTTGGCTAATGCTACTCTCCCTCCCATACATACAGGAGGGTCCGTTATGCTCGTCGGACTCCCCAGGCGAACACTTGCGCCTCTTAAGAGTTACATAAAAGATCCCATCTGTGTAACTCTGGAACAGTTATCTCTGAACAGGACTCCATTTAACACCTACTCACAATGCCATCCTAACACCTTTAGCCCAGCTGCGTCACACCAATTCACACCTCTATACTCCCAACAACTGTCCTGTGACCTTAACCCCATAAACCTTGggcatagttttttttttttttctcaatttctcATCTTACAGCATAATATTCTGTAATTACTATGACATACTGAGTCactattgcaaaaaaaaaataggaaatgtGTGTAGTTACAAGAGTAAGGAGTCTACGTCTGGACCCCTTGATAGATCGTCTTGGGTTTAACAGGTTTTATGACATCATAAGTGTGAATCACCACAGAGGTTTAAATGTCAGAGGTTTTCCCACCACTCAGTACAACTGATAAGCACTGAACTATCTAAATGACTATAACAAGCTGTTCTGCTTTATTCCCACTAGACATAAACTTCAGATTCAACTCTTTCctagtgtgttttttgtttgatgtTGGATTTTAATATCACTGCTGACAAAACTGATCTATCCAAGGGATCTATGTAATATGATCCATTTAACTACCACTGTTTCTCCCCTGAATTCAAGTGGGGACCACTCTCTACTTTGCTATGTTAGGCCAAGTGAACTTTTATAGCTCTTCTCTGGATCCGTTTACAGCCAGCCGAGTTTTTATAGAGCAgtgtttcttcttcttaaagCAAATCACACCTCCTCCTTTGGCTGTAATATTTATCGTACAGTGGTACTGTATGCCAAAAGTCTGCCAAGACACTGAACCCTCACTGCGTCCAATCATAGCATACACACTTGATGAGATGAATACTGCTTTCACCAAGGACGTTAGCCTTACTCATgagtatttatatgtattttcatATGATGCACCATGTCGTGCAGAATCACTCAGTGGTATGCAATATTTCTTACAAGCATTTTGTGCTGAATTGTCTTAAATGTACATATGTAATTACTTTTAGCAgcataaacatttaacattatactGTGTGCCTACTTGTTTTTTACAGTTgaataaaagctgcagtgagGTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333645 lncRNA downstream 114458 12476264 ~ 12477629 (-) True G281527
TU333624 lncRNA downstream 132995 12457563 ~ 12459092 (-) True G281510
TU333597 lncRNA downstream 222822 12368959 ~ 12369265 (-) True G281486
TU333565 lncRNA downstream 337932 12251314 ~ 12254155 (-) True G281455
TU333459 lncRNA downstream 498028 12093857 ~ 12094059 (-) True G281373
XR_003403338.2 lncRNA upstream 513062 13146282 ~ 13147358 (-) True LOC113532391
TU334183 lncRNA upstream 535455 13168675 ~ 13210493 (-) True G281964
TU334201 lncRNA upstream 625932 13259152 ~ 13285718 (-) True G281981
TU334236 lncRNA upstream 686953 13320173 ~ 13373048 (-) False G282006
TU334237 lncRNA upstream 686953 13320173 ~ 13321414 (-) True G282006
XM_026923289.2 mRNA downstream 3407 12584837 ~ 12588680 (-) True kcnj8
XM_026923288.2 mRNA downstream 12133 12570068 ~ 12579954 (-) True cmasa
XM_026923775.2 mRNA downstream 74404 12496039 ~ 12517683 (-) False shisal1a
XM_034313228.1 mRNA upstream 154662 12787882 ~ 12803422 (-) True nuak1a
XM_034313229.1 mRNA upstream 154662 12787882 ~ 12803052 (-) False nuak1a
XM_034313230.1 mRNA upstream 154662 12787882 ~ 12798656 (-) False nuak1a
XM_034313323.1 mRNA upstream 176101 12809321 ~ 12819706 (-) True prl2
XM_026922677.2 mRNA upstream 329496 12962716 ~ 13110214 (-) True LOC113531778
XR_003403346.2 other downstream 11024 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 931760 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 1004063 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 1332695 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1584944 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 2541128 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4325304 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 4470345 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5345565 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 5345565 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile