RNA id: XM_026922838.2


Basic Information

Item Value
RNA id XM_026922838.2
length 5781
RNA type mRNA
GC content 0.52
exon number 30
gene id mical3b
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8390678 ~ 8426378 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGACAGAgccgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgtgagTGAGGCAGTGACGGAGCAGTCCCAGTTTCTGCACTGCAGCTCTCTCAGATGGGCCTGAAGGAAATGGAGCTGCAATAGCAGTGGAGTAAATCTGGCAACGTGCCAGAGGGAGTAAGACAGAAAGTAAGACAGAAGCGAAGGAGTAAGACAGAAAGTAAGTGAGGGAGAGGGAGATTGGATGTCAGCagcgtgtgtgtgctgcagtgaCCCGACACTgtGTGTTGGGATCACGTTGGGATGAGATGGGTGATGGGCAGGTGGTGGGGGAGGGGTGCTGCCCTGATGCCCTCTTTGACAGTTTTGTGCAGGCGTCGACATGCAGGGAGACCCTGCGGGCGTTTCAGGAGCTCTGTACTGAGCTCCACCTGCAGCCAGGAGACAATCTGCTATTCTACAAGACCCTGAGGTCCAGACTGCACTACTGGAGAGCCAAAGCTCTGTGGGCCAAGCTGGACAAACGAGCCACCCAGAAAGAGTACCAGAGGGGCCATGCTTGTTCTAACACTACATGTCTGATAATAGGAGCAGGACCATGTGGGCTTCGCACGGCTATCGAGCTGAGTTTTCTGGGAGCAAGGGTGGTGCTGGTGGAAAAGAGGGACACTTTCTCCCGGAACAATGTCCTCCATCTGTGGCCTTTCACCATCCATGATCTGCGTGGCCTCGGAGCCAAGAAGTTCTATGGAAAGTTCTGCGCAGGGGCCATAGATCATATTAGTATTCGTCAGCTGCAGCTCATACTGCTGAAAGTGGCTCTGCTCCTGGGTGTGGAGGTTCATGTGAATGTGGAGTTCAGGAGTCTGAGGGAGCCTCCGGAGAACCAAGAGAACCAAAGTATTGGCTGGAGTGCTGAGGTCCATCCCCCTGCACATCCAGTGAGTGAGCTGCAATTCGATGTGGTTGTTGGAGCAGACGGCAGGAGGAACACCTTACCAGGATTTCGTAGGAAAGAGTTCCGGGGAAAGCTGGCCATCGCCATTACTGCAAATTTCATCAACCGTAACACCACAGCAGAGGCCAAGGTGGAGGAGATCAGCGGCGTTGCCTTTATTTTCAACCAGAGGTTCTTCCAGGAGCTACGCAGTGCCACTGgtATTGACCTGGAGAACATCGTCTACTATAAAGATGACACTCATTACTTTGTCATGACGGCTAAGAAGCAGAGTCTGCTGGAGAAAGGAGTCATACTGCATgATTATGCAGACACAGAGGTTTTGCTCTCCAGAGACAATGTAGACCAGAATGCCCTGCTGGCGTACGCACGGCAGGCAGCGGACTTCTCCACCAATCACCAGCTGCCGACTCTAGACTTTGCCATGAACCACTACGGGCAGCCGGATGTGGCTATGTTTGACTTCACATGCATGTATGCGACGGAAAACGCAGCTCTCGTACGGCAGCGCAGAGGACATCGGCTGCTGGTGGCGCTGGTGGGAGACAGTCTGCTGGAGCCGTTCTGGCCAATGGGGACAGGCATTGCACGTGGTTTCTTGGCTGCTATGGACACAGCGTGGATGGTTAGGAGTTGGGGACTGAGGCTTGACCCTTTAGACGTGCTGGCTGAGAGGGAGAGTGTGTATCGGCTGCTTCCTCAGACTACGCCAGAGAACGTCAGTAAGAACCACAGTCAGTACAGCCTGGACCCCGGCACACGCTACCCAAACCTCAACACACAGGTTATTAGTGCATCTCAGGTCTGCCACCTCATAGACACAGATGAAGGGCCACTTTTGGGAGTTGTCATGGGACCTTCTCCAACATCGAGACTTACACACCAAGACTCCACAGCTCGTTCGAGTAAGCTGCTGAGTTGGTGCCAAGAGCAGACGCAGGgctacaggagtgtgtgtgtgacggacCTCACCACATCCTGGAAGAGCGGACTGGCACTCTGCGCTCTCATACACAGATACAGACCTGACCTCATTGATTTCGACTCTCTGGATGAGAACGAGGCTGAATTGAACAACCAGTTAGCCTTGGATGTAGCTGAGCGGGAGTTGGGGATCTCACCCATTATGACAGGCCAGGAGATGAGTGTGCTGGAGGAGAGTGACTCGCTCTGCATGGTCATGTACCTCAGCCAGCTTCAAGATCTCCTCAAAGACACAGCGCCACCCAGTGAGAGTCTGAGTGCTGAGGAGAGAGCAGCTTTGATGTCTAGCACCAAGTCTCCACTGTCTTTACTCAACAGGCTTGGACAGAGTCTGTCCCGCAAACGTAACCCCAAGGATAAGAAAGAGAAGGCTGCTGATGGAGTTGGAAAGAGAAGAAGGACAAGTCAAGCTGGACATTCAGAAGATGAGGACGTCCCACCAGTGAGCCCTGGATCAGAATCGAGCACAGCAGCGGTTGCCGGTGGCAACCAAAGCCGAGTCAAATCAATGGCATCCCGGCTGTTGGCCAAGTTTGAAGAAAACGCCTCCCCAGCTTCAGCCACTGCGATAcggagacagGTTTCTCAGCGGAGAGAGTTCCCTGTGAATGTCGGCGGCAGTGATGTGTGTTATTTCTGCTCCCGGCGCGTCTATGTGATGGAGAGACTAAGTGCTGAGGGCAAGTTCTTCCACAGGAGCTGCTTCCAGTGTGCCCACTGCAGCTCTACACTACGCCTCTCCAACTACGCTTATGATGATCTCCAAGgGAAGTTTTATTGCAAGCAGCACTACGGATACAGGCTGGCGGGAATGGCTCAGAGGAAGAGACCAGCTCCAATCACAGCTCCGCCTCACTCTACGCAGGCACCTCCTGCTCTTCCTCCCACTCCTCTGTCACTCTCCTCCTCTGGATCAGTAGAAGTGGTCCCTCCCCCTGACAGTGTCTCCTCCAGCACTCCTCCAGACGCTCTGAGTGGACTGGCTAAGCGGCTGTGTGGAACACCGGAGCGCATTGCACTGGAAAACTACAGGCCGTGCTTGCAGGAGGAGGACAGCCCTCTGCAGGAGGTGCCTGAGGAGACACTAGCTCAGCACAACCTCAGCCTGAGCCTGCAGGAGAAAGGGAGTGAGGAGCAGTCCAGTAGTTCAGAGTCAGAGCTGGAGGAAGAAGGGGAGGAGCCTTGGAGGAAGGGGGTGGAGCCACAGGCCAAGGCAGATGGAGAGACGGAGTTAAACAGTCGGACAGaccaaagaaaagaagaagagaaagaaaaggatgaGCAGGAGggagaagaacaagaagacGTTTCTGAAGGAGAAGAGGATGAAGGGCAGTCTAGTGATGAGGGCGAATACTGCCCTTGGGAAAAGGAGTTGCATTTAGGGTTGTGGCTAAAGGAAGAGGAGGCAGGTGGGATTAAAGAGTCTGGTGAGGAACACTCTGATGACCCTGAGGTAAAACCTCTTTCAGACAGAAAGCCTGAATCAAGTGTCTCTGGGCCAATGGAGCCCCTTCCCTCGCTAGCTTCAAAAACCCTACACACATCCATCATAGACcctatacacacctatacaccCACATCCAACCCTCCTCTGACACCAGAGGACCCAGCAGCCAAGAGATCTGGGGTCATTGAGGAATTCTGGCTGAAGAGTGCAGAAATCAGGAAGAGTTTGGGGCAATCAGGGGTGCCTGTGACCTGTGATCAAAACACCCAGACCTTGAGCACTGGAGATACATTttacacctctacacacacaacatctgATTCCAACTTGCCTTCACACACTCCCTGTAAGAGTGACTCAATCAACCAAACCTCAGGTACACTAACTCAGAGTGCTGGCACTCACAGCACACAGACGCCTTCTATGACTGACCTACAAAGTGCATATACACATTTCCAAGGTGGTACATCATCATGTGGCAGCTCACACCCTCCAGAAACAAGGATTGAGAATGTGTCTGTGAAGGAGGGGAATAAACTAGAGGATCAAGTAGCAGAAGAGGTagtctcctcctccatcaccaGTGGAACCCAAAGAGTTTCAGCCCCAGATTTGCGATTTTTGCCTCTTCCTAGGAGTCCTCCAGTAGCAAGGCAGAAGCTTGACTTGAATCGCTCAGATCCAATTCTAAACAGGAAAATCTTGTTGAGTTCCCACACTGTCCCTCTTCAGACTGACCTTGTACAGCATGATAGGCTGAAATCTCACCTGAATAGAGCTCAGAGTCTACCTCCTGCTGAGGTGGAGGTCTTATATGCAGGAGATGCAGATGAATTGCATCCTTGCCCTGCTATGCCCTACTATGCCAGCGTCACAGAAGTTCCTATGTCCAGTCTCCCAACCGAAACCTCTGGGAAGGACAAGAGTGCACTGGAGGGAAGGAGGGCACTATCAGAAGTCCCCTTGAAAGTGGGTGGGGCTGAGGCCTGGCAGCAGAGGTCAGAGATCGAGCCATTGGAGGAGGAGAAGGTGAAGAAGCGGAGCTCACTGTTCTCACCAAGGAAGAACCGAAAAAGTGGCAACTTGTCAGGGGAAACACAACAGGAGCTGGGGAAACACAAATCCCTGTGGAAGAGTGTCTTCTCTGGGtataagaaagagaagaagaggaaggagaTACAAGGTTATTCCAGGACTCTGCCGAGCACTACCAGCCTGGAAAGCAGGAAGAGAATGCCTGGCTTTCGCAGAACCTcagACCTGAGCTCAATGAAGGACCTGAGCTTCTCTGAAGAAACAGACCTGTGCTGCAGTGTTGTGCTAGACAGATCTCCACTTAGAGCTCAGTCTGTTTATGTGCCCCACGCATTGGCATTCAAGAGAGCGTACGCCATTAAGAAATACAGCAAGAAGTCACAGAGGCCTGAGAAGGTGGTGACCACAAAATCATCATGTTCCACTGAGGTGGTAAGGGTGTGGGTGGTGTTCCCTGACCCCTCGAGTATAAGCTTATCTTCCACACTCTTTCAGAAAGCAGCAACTGAGGAGGAGCTTGACGCCAAGCTGACCCGCAGAGTACAAAGAGCTGCACGCAGACAGGCCAAGCAGGAGGAGCTGAAAAGGCTGCATCGTGcacagaTAATCCAGCGGCAGTTGGAGCAGGTGGAAATGAAGCAGAGGCAGTTGGAGGAGAAGGGCATTGCTGTAGAGAAGGCTCTCAGAGGAGAAGCAGACTACTGGGAGGACTCTAGTGCCTCAGACCTTCTGGACATACACCTGGGTGGAATGGGGAAGAAGGATGACCCCAGCCTAATGCACCAGTGGTTTAAACTGGTCCAGGAGAAGAACGCACTGGTGCGCTACGAATCTGAGCTGATGATATTtgctcgagagctggagctggaggacAGGCAGAGTCACCTGCAGCAGGAGCTGAGGGAACGTATGGCAGTGGATGaccaTCTGAAGGATGAGGAGGAACTGGCAGAGGAGAGGCGAATCCTGGGCGAGATGCTGGACGTTGTAGAGCAGAGGGATGCTCTAGTGGCTCTCCTAGAGGAGAAGAgactgaaggagagagaggaggacagCGACCTGGAGGCAGCCATGCTGTCTAAGGGCTTCAGCCTGCATTGggcttaaaacacacacacacacaaaccttttcTGTGTAGAATAAGGAAGGAGGTGGACAATGTTCACTGGACACAGGAAATTAAGGAAACGTCTTCCATAAACTACATGAAACTACTTTTGGATCTACAGAAATATGTATTTCTACTGGACCATATTTGCTTGTGCCCGCAAGTGTGaagtaatttaaaatattcttggGCAATTGCgcaatgtatatacagtatactgtgtgtgtgtgtatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330707 lncRNA downstream 121 8389498 ~ 8390559 (-) True G278963
TU330657 lncRNA downstream 151004 8238974 ~ 8239676 (-) True G278920
TU330636 lncRNA downstream 173387 8217013 ~ 8217293 (-) True G278911
TU330235 lncRNA downstream 423259 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 511663 7796835 ~ 7879017 (-) True G278520
TU330836 lncRNA upstream 185763 8612118 ~ 8612342 (-) True G279064
XR_004579873.1 lncRNA upstream 272075 8698430 ~ 8698791 (-) True LOC117599455
TU331172 lncRNA upstream 767261 9193616 ~ 9194003 (-) True G279382
TU331392 lncRNA upstream 909981 9336336 ~ 9337530 (-) True G279588
TU331405 lncRNA upstream 959778 9386133 ~ 9387789 (-) False G279592
XM_026923666.2 mRNA downstream 2323 8358310 ~ 8388357 (-) False tspan9b
XM_026923665.2 mRNA downstream 18174 8358310 ~ 8372506 (-) True tspan9b
XM_026922634.2 mRNA downstream 56191 8322995 ~ 8334489 (-) False dmtf1
XM_026922633.2 mRNA downstream 56191 8322995 ~ 8334489 (-) True dmtf1
XM_026922676.2 mRNA downstream 79011 8301479 ~ 8311669 (-) True dclre1c
XM_026923146.2 mRNA upstream 3140 8429495 ~ 8439796 (-) False svopl
XM_026923145.2 mRNA upstream 3140 8429495 ~ 8439796 (-) True svopl
XM_026923144.2 mRNA upstream 16854 8443209 ~ 8471894 (-) False si:dkeyp-27e10.3
XM_026923142.2 mRNA upstream 16854 8443209 ~ 8471894 (-) False si:dkeyp-27e10.3
XM_026923141.2 mRNA upstream 16854 8443209 ~ 8471894 (-) True si:dkeyp-27e10.3
TU330637 other downstream 171000 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 322603 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 796872 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2287533 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2357487 6033029 ~ 6033193 (-) True LOC113532437
XR_003403340.2 other upstream 382865 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 780996 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1196178 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 1843402 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 2568750 10995105 ~ 11007143 (-) True si:ch211-51e12.7

Expression Profile