RNA id: XM_026922866.2


Basic Information

Item Value
RNA id XM_026922866.2
length 4134
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC113531895
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 16622103 ~ 16647682 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAcgctctctttctccatctctcccgTTTGGAGCGGGAGGGACAGGACAAGCTCGGATGACACTCCTGGCCTGCAGAGCTCCCCTACCTCAGCAGTAACTGGGAGCTgttctctccttcctctcctctctccctctctctctcttcgtttctctgtctctctgcatgtTTGTGGGGGCATGGCGGCCGAGGGGAGATGCTCCTATGCTGCTGGTGGTGCCTGAGGCCGGAGAGGCTCGAGAGAGTGCTGAGCGGCGACACCACACAGCCAGATCAATGGGACCGAGGCGTGCACTGCACCCAGAGTGTGAAAAACTCTAGCTACAGCCTTTCATCCTACCCTCCTTATAGCACCTACGAGTACTCGGACCAGAGTAGGCACAGTGAGAAAGAAGGCCTGTGTGGCCTCTCCAACCTGGGCAATACCTGCTTCATGAACTCTGCTACACAGTGTTTGAGTAATATTCCTCCGCTCACTGAGTACTTCCTGAAGGACAAATATCAGGATGAACTGAACGAGGACAACCCTTTAGGAATGAAAGGAGAGATCGCTAAGGCTTACGCTGAGCTCATCAAACAGCTCTGGTCTGGCAAATACAGCTACGTCACTCCTAGACCTTTCAAGACCCAAGTAGGGCGCTTTGCCCCTCAGTTCTCAGGCTATCAGCAACAGGATTCCCACGAACTGCTGGCCTTCCTTCTCGACGGCTTGCACGAGGACTTGAACCGCATCAGGAAGAAGCCCTACATCCAGCTCAAAGATGCTGACGGAAGGCCAGACAAGGTAGTAGCTGAAGAGGCCTGGGAGAACCACATCAAGAGGAATGACTCCATCATCGTGGATATTTTTCATGGCCTCTTTAAGTCTACGTTGGTCTGCCCTGTGTGTTCGAAGATCTCTGTGACTTTTGATCCATTCTGTTACCTTACACTTCCTCTGCCCATGAAGAAAGAGCGTACGCTGGAGGTCTACTTGGTGCGGCTGGACCCTCTCACCAAACCCACACAGTATAAGCTGACAGTACCCAAAGTCGGCTACATCTCAGACCTCTGTGCTTCTCTTTCGGCTCTGTCCGGAGTACCTGCAGAAAAGATGATTGTCACAGATATCTACAACCACCGGTTCCATCGAATCTTTGCCACCAATGAGAACCTGAGCAGTATAATGGAAAGGGACGATATCTACGTGTTTGAGGTTGGAGTAAACCGGCTAGAGGACACAGAGCATGTGGTGATTCCTGTGCACTTGCGAGAGAAGTATAAGCAGTCTGGCTATAACCACAGCAGCACGCCCCTGTTTGGCCGACCCTTCCTCATAACCGTCCCGCGGACTCTCAGCGAGGAGAAGTTCTACAACCTGCTGCTTCTCCGTCTGTGTCGTTTTGTGCGCTCAGCTCTGGAAGAAGAGGAATGTGACGAGACGCACTTGTCCAAGCAGCACGCCATCAACGGCAATGCCACTAACGGTATTCTGGAGGAGGGCTCGCCCAGTGAAATGGAGACTGATGAGCAGGATGATGAATCAAGTCAGGACCAGGAACTCCCATCAGAGAATgacaacagccaatcagaggatTCGGTGGGCGGGGACAACGACCTGGAGAATGGGGTTGCCCCAGAGAACACGACCAAAAGCCAGCAGCTCACAGGCCACAAAAAACGTCTTTTCACATTCCAGTTCAACAACATGGGCAAGACTGATCTGAGTTTTATTAAAGAAGAACCACGGCAGATCCGATTCGATGAGGGACACCTTCGACTCAGCGACAGATCCTATCTTTCCTTGGACTGGGAGCcagaaatgaagaagaaataCTTTGATGAAAGTGTAGTAGAGGACTTTGATAAGCACGAAAGCATGGAATACAAACCTCAAAAGAAGGCCTTCTTTAAATTAAAGGACTGCATAGAACTCTTCACTACCAAAGAAAAGTTAGGAGCAGAGGACCCCTGGTATTGTCCCAGTTGTAAGCAGCACCAGCAGGCCACTAAGAAGCTAGACTTGTGGTCCCTGCCTCCTGTACTAGTGGTCCATCTGAAACGCTTCTCTTATAGCCGCTACATGAGGGATAAGCTGGACTCATTGGTGGACTTTCCCCTTCGTGACCTGGACATGTCCGAGTTCCTGATCAACCCCAATGCTGGGCCTTGCCGCTACAACCTCattgctgtgtctaaccactaTGGAGGAATGGGAGGAGGCCACtATACGGCCTATGCCAAAAACAAGGACGATGACAAGTGGTACAACTTTGATGACAGCATTGTATCGCCAGTCAGTGAGGATCAGATTGTGtccAAAGCAGCCTATGTCCTATTCTACCAGCGTCAGGACACGGTAAAGGGAACGGGCTACTTTGCTCTAGACCGCGAGGACGTCGAGGAGCAAGAGAGCAGCTTAGCACAGGGGGTCAATGGCCAGAGTGACGAAGATGACGACGAAGAGGAGGAAGACCTGAACGACAATGAGCAGGATGAAGAGCTGGAGCCAAATGACGTTTCCATGAACACCAACTGAGGTGGGACAGACCTGGCGTCGCAGGATAGTGGGGTCGGTCATCTGAAGCCATATCGAGAGCAGCGAGAGCAGAGAGTACCACAACTGGATGGGCTGGGTGATAAGAGCCCTTGTGATTTTAGCCTCTGATACAGCAGGGTGATGTTTATTCtcccttttttttagttttccacATGGTTCCCCTGCCTCTGCTCGTTCTACACGTCTAAAGCTCTGGTGGTGAAAGAAAGCCTGAACCGGCTAAACAGAGGTCTAAATGTGATGCCTGAAAGTCAGCAACGTTGCTCTTTCAGTTTCCTTCATTGTAGTGTGgtgttctttattttctcctcGAGAGGCACATTTATAGGTTTTATCGTTATTTTGCCTTGTATATAATGTTGGATGGACAGTGAACCTCTGGGTTTTAAGGATAATGAAATTTCATTGACTGTTTTTGTTGCAcactccattttgtttttagagCTAGTATTAGTGCCACACGTACTGCAGAAGCGGATTATAGCTTTCTGGTGTCCAGTCTATCAGCTGCTCAGAAAGATGTCTTTAAACCAATGGTAAATGTATCAAGAAGCTATTTCACTCATGTCAGAAGAGCACTGATACATAATGTAAAAACTTTAGTCAGTTGTGCTGCTGTATGCCTCCTTATGGGTTTTTAGGGTAATTTAAGCCTGGCAGTTAAGGGTCTCCTGACATTTTGACTTTAAGCTACTTCAAAAACAAAGGTTTTCTTAAAGGCATGACTTTTAAGAACCATAGCTTTACCATTGCTTCAGATGTAAGTCTCATTCTTTTTCACCATAGATGCTTTTTAATGAGATTATGAACATTTCGGTGATGCAATAGGTTTGTCTCTTGCCTCCATCACCTCGCCTTAAATCTAATCTCAGACTGTTGCCTGTTTGCACAGATATTAGTTTATTTGCATTTCTCATACATGCACACCTAACGTAGATGCAGCCATAGGTGCAAGCTCACTtgttcatcacacacacgctttaaCATAACCCTGCAAACACATGCTCTAGTGACTGCTGAAATTTGCCAGTTCTCCCAGATTGGCAGCCAGAATGTATTTGACTAAGGAATTGACCTGTTTTTGGATTGATGCCTTcaactgaaagttttttttttttttttggctttagttttagtttagGGGTTTGGGGAGGGTGATTGAATCGCCTTTAATATTAACTACACAAAAAAGTGGGGCTACTGCTGTATGTGCTTTGTGTAATAGGGAGTGTGGGCACAGGGATAATCAGACTGTGTGAGACTGACTGGTAggctttataaataatgtatataagaaTTCACTCTGTGAGTGCACATttgataaatttatttatttatatgtaagcATTACAAAACAAATGTATTTAAGACCACAAGAAGAGAGAATATGTATCGTCCAGCAGTATAATGGGGACTGGGATTTAGGTCTGTTAAAGGATGTGCTGTTGCTTGGAGTCTTTTGTAAAGGTAAACTCGGACATCCTTGCATGACGAAGGGGGTTTCAGCATTTGGCTGCACTTGAGTTCACTTGGGTTTACATTtgaaatgtgcatgtgtatttatatacagaCCTTCAATAAAGTTGTGTAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579992.1 lncRNA downstream 2385 16618712 ~ 16619718 (-) True LOC117599589
TU335948 lncRNA downstream 172337 16448439 ~ 16449766 (-) True G283546
TU335946 lncRNA downstream 172337 16449017 ~ 16449766 (-) False G283546
TU335947 lncRNA downstream 173328 16448439 ~ 16448775 (-) False G283546
TU335937 lncRNA downstream 220155 16400921 ~ 16401948 (-) False alg12
TU336181 lncRNA upstream 203604 16838535 ~ 16849762 (-) False LOC113532230
TU336452 lncRNA upstream 406696 17041627 ~ 17043280 (-) True G284003
TU336615 lncRNA upstream 871945 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 878679 17513610 ~ 17515240 (-) True G284134
TU336619 lncRNA upstream 886495 17521426 ~ 17523643 (-) True G284135
XM_026922749.2 mRNA downstream 40667 16568695 ~ 16581436 (-) True il17rel
XM_026922599.2 mRNA downstream 169164 16449786 ~ 16452939 (-) True LOC113531729
XM_034313344.1 mRNA downstream 215240 16401207 ~ 16406863 (-) True alg12
XM_034313343.1 mRNA downstream 232622 16369669 ~ 16389481 (-) True brd1a
XM_026923051.2 mRNA downstream 843161 15756306 ~ 15778942 (-) True cerk
XM_026923801.2 mRNA upstream 14141 16649072 ~ 16662362 (-) True LOC113532402
XM_026923803.2 mRNA upstream 14141 16649072 ~ 16662351 (-) False LOC113532402
XM_026923800.2 mRNA upstream 28996 16663927 ~ 16685402 (-) False kdm5a
XM_026923799.2 mRNA upstream 28996 16663927 ~ 16685402 (-) True kdm5a
XM_034313133.1 mRNA upstream 53442 16688373 ~ 16699456 (-) True LOC113531734
TU335292 other downstream 1444490 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 4041040 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 4961776 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 5034079 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 5362711 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 323593 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 468634 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 1343854 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 1343854 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 1435816 18070747 ~ 18082361 (-) False tmem209

Expression Profile