RNA id: XM_034313364.1


Basic Information

Item Value
RNA id XM_034313364.1
length 3482
RNA type mRNA
GC content 0.47
exon number 23
gene id ppfibp1a
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 21189925 ~ 21226343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCCACAAACCCCCATGattctacacacacaagcatgttGGGGTTTTTTCCCCAGACCAGTTTGCTGCTTGCCTTTATATGAcaactgcattttatttcttgtaaTCTTTCTGTGTACTGGGACCTTTTTAAACCTTCACTTACGAAAAAAGCAGACTAACGGTCATGGATCTGCAGCGAGGGATTTGGCATATCAGGAGCGACTTTCACGGCTAGAGAGTGACAAGGAATGTCTGGTGCTACAGGTGAGCGTTCTGACAGACCAGGTGGAAGTGCAGGGAGAAAAGATAAGGGACCTAGAGATGTGCCTTGAGGAACATAGAATGAAACTTAATGCCACAGAAGAATTACTACAGCAGGAGTTGCTGAGCAGGAGCACATTAGAGACCCAGAAACTGGAGCTGTTGACGGAGGTATCCAGCCTGAAACTGAAGCTTACAACAGCAGATCGTGAGAACAAGGAAAGTGAGGCCCTTTATCAGGAGCTGAGTGAAATGCGCCTCAGAGTGACTACTGCAGAGACGGAAAAAGTGCAGCAGGAAAGAAGCCTGAAGTCAACCAGAGAAGAACTGGTGGCACTGCAAAAGCAGCTtgaggagcaggagcaggagctgcAGAGCCTGAAGGAACAAGCCGAAGCTGAGGTCATGACCTCAGACGGAAGCCAGAGCAAAGCGAAAGatTTGGAAGTGCAGAGAATGAAGCAGGCTGTTGAGTCTTTAATGGCGTCTAACGTTGAGAAGGATCATATGATTGAAGAGTTGCAGCAGTCCCTGTTACGCTGTAGGAAAGTCCAGGACGTGTCGATGACAGTACAGGAAAGGAAAGACGAAGAAGAGGACACCAGCACGGGACAGTGTGAAAGTTCACCCAAATCACCAACCACTACAGTTACTGAGCCTATTTTCCTCACAGGCACAGAGGAGACTGATGAGCCTCAGGTGATTCCGTGCACTGAGTTTATCTCTGAGTCTGAACACAAATCAGCAGCTGATGCAGATCCATGCCTTCTTAGACACAGTTCCTCCGAGAGGCTTGGATCAGAAAACTCATCTAGCAGAGAAGAGGCTGAGCTTGGTGAAAGAGCAGATAAGAAAAGCAACTCTCCCAAAATGTCCCCCTCTCAGCCCAGCCCAGGCGGGAGTGAAAGTTTTGGCACCAAAAAAATACGCTCCTCATTTGGACGTGGCTTTTTCAAGATTCGGGGTGGAAAGAGAACAGCCAGCTCTCCTGATCTAGCAGCTGAGGTGGAGAGGAAGAGGACTGAGCATTTGGATTTGGCAGGAGCTCCATCTCCCAAGTCAAAAGAGCATGCAATCTCACCCGAGGGCAAGAAGAAAGCTAAGGGGATCCGAAAGTTCTTGGGAATGATGAGGAGGAGCCAGTCCACTTCGTTTAACCTGGACGATGCTCCCGAGTCTGAGTTCAGGAGAGGCGGCCTTAGAGCTACTGCTGGGCCAAGACTTGGTTGGTCACCTGACTCACAACGGAGCAATAACAATGAGCTAGACACCCCGTTTCCATGCTGGAGTACAGAGCAGGTGTGTGAGTGGCTGCAGGAGCAGGGCTTAGGCCTGTACGTGAATCAGGCTCAGCAGTGGATCCGCTCTGGACAAACGCTACTAAATGCCTCACAGAATGACCTCGAAAAGgagCTGGCCATCAGACATCCTCTCCACAGAAAGAAACTCCAGCTGGCACTTCAGGCTCTGGGTGCAGAGGAGAACGACGCTAAAAGCAAACTGGACTTCAACTGGGTTACTCGGTGGCTGGATGATATCGGCCTGCCTCAGTACAAAGCTCAGTTCGACGAGGGCCGGGTGGACGCGCGCATGCTTCACTACATGACTGTGGACGATTTGCTGGGTCTGAAGGTGGGCAGTGTGCTTCACCATCTCAGTATCAAGAGGGCCATCCAGGTGCTGCGCATCAACAACTACGAGCCCAACTGCCTCAGACGCAGACCATCTGATGAGAACAACATCACGCCAGCAGAGGTGTGCCAGTGGACCAATCACAGAGTGATGGAGTGGCTGCGCTCGGTAGACCTGGCAGAGTATGCACCCAACCTCAGAGGAAGCGGAGTGCACGGAGGACTGATGGTTCTGGAGCCTCGGTTCAACGTTGAGACAATGGCCCTCCTCCTGAACATCCCGCCTAATAAGACGCTCCTGAGACGTCACCTGGCCACGCACTTTTACCTCCTGATTGGTGCAGAAGCAGAGAGACTCCAGCAGGAGTGTCTGGAGCACCCTGACTACACGCTGCTCACCGCCACAGCGAAAGTGAAGCCGAGACGCCTTTCCTTCGGAGGTTTCGGAACGCTGAGGCGGAAGCGACAGGAGGAGAGTGAAGAACTTCTGTGCCCACTGGAAGTGCAGATACCACAGAACAGCAGCTTCCACAGGGAGCAACGCATCAGTGAGGACAACCTGGACCAGCTTGAGCAGATGGAGGACTCGGAAGGCACAGTGAAACAAATAGGAGTGTTTTCAGAGGGGATCAGCAACCTCACTAGCATGCTGAAAGAGGACGAGCTCTTCAGGGAGATACCATCTCACTCTCCTGATGCCACATACACTGACTCCAGCACATGAGCATAAGCCTGTGTTAGCAGATCCTGGAGAACCAAACGTGTTCCTTTACTGTGATTTTTATCACAAACAGCTCCACATAGCACCACCTGTGAAGATCATTTACACATTTCCAGCTCCGTAGGCCTACGATGGTATTACTTTCCTGTCTGACAATCAAAAGCAATCAGCAACAGTGgaatgtgttatttattcttctttttactGTCTAcagcatgatgtgtttgtgttcatgaaAAAGCATACCAAAGTCTGCAGATGGTGACCAAAAATATTTTGGATCTTGTTTTAGTTAGATTACATCCTTATTCTTATAATCAGTTTTGATGTATACATAGATTCCTGCATATATTTGCATGTGTCACTCTGTACTGAATTTAGACACTTACTGCCTGGCAGGTACATTGGGAGTATTGAGTAATAATATTCTTATTTGAAGCATTTAGTCTGCACATCACTGGATATTTATTCCTTAACCAAAAATGTCCATGTGTTGTGTGCGGTTTTATGAATTGAAGTCAATAAAATTCTGTGAATCTTCATCTGTTACATGCAGTACTTATGTATTGTTTTTTAGACCCATACAAAATTCATAACAGCTACTCCAGTTGtgagaattttttattttattttttttacagttttaaaatccaacagttttttatatttattgtgatgtaataattcatattatattaatagCATATTCCATAATTCAACAGATCAGCTTAGTCCAGTTAGGGGTGCAGTTAAAGATGACTATGAATTGTAATTGGTTGgtacatattttgtttttataatgtttaaatacaGCAACTATTTTAAACACTTAGATTTGTCTGAAGCAAATTTAATAAATtgccaaaattaaaaattactaaGAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338918 lncRNA downstream 27005 21104808 ~ 21162920 (-) True G286192
TU338938 lncRNA downstream 47237 21141474 ~ 21142688 (-) True G286212
TU338654 lncRNA downstream 259005 20928521 ~ 20930920 (-) True G285934
TU338631 lncRNA downstream 284267 20905423 ~ 20905658 (-) True G285911
TU338627 lncRNA downstream 293438 20896281 ~ 20896487 (-) True G285907
TU339022 lncRNA upstream 19635 21235182 ~ 21235425 (-) True G286272
TU339053 lncRNA upstream 88708 21304255 ~ 21304529 (-) True G286301
TU339057 lncRNA upstream 193497 21409044 ~ 21409298 (-) True G286305
XR_004579864.1 lncRNA upstream 276094 21491641 ~ 21492712 (-) True LOC117599448
TU339096 lncRNA upstream 280830 21496377 ~ 21496619 (-) True G286337
XM_034313152.1 mRNA downstream 10414 21174184 ~ 21179511 (-) True LOC113531875
XM_026922827.2 mRNA downstream 17665 21164706 ~ 21172260 (-) False si:dkey-222f8.3
XM_026922826.2 mRNA downstream 18371 21164706 ~ 21171554 (-) True si:dkey-222f8.3
XM_026923080.2 mRNA downstream 56432 20939745 ~ 21133493 (-) True btbd11a
XM_026943470.2 mRNA upstream 245280 21460827 ~ 21465533 (-) False LOC113544587
XM_034313134.1 mRNA upstream 388353 21603900 ~ 21630503 (-) False nrf1
XM_026943465.2 mRNA upstream 388353 21603900 ~ 21630503 (-) True nrf1
XM_026943483.2 mRNA upstream 516042 21731589 ~ 21751582 (-) True ints13
XM_034313049.1 mRNA upstream 546134 21761681 ~ 21782085 (-) True cog5
trnaa-ugc_16 other downstream 767453 20422401 ~ 20422472 (-) True trnaa-ugc_16
TU338301 other downstream 869875 20313067 ~ 20320050 (-) True G285607
trnae-cuc_38 other downstream 2977532 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 3001927 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 3097381 18092473 ~ 18092544 (-) False trnaa-ugc_14
XR_004579970.1 other upstream 245279 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 245279 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 245280 21460827 ~ 21471100 (-) False LOC113544587
XR_004579972.1 other upstream 245280 21460827 ~ 21471055 (-) False LOC113544587
TU339722 other upstream 1270689 22486236 ~ 22489467 (-) True G286852

Expression Profile