RNA id: XM_026922889.2


Basic Information

Item Value
RNA id XM_026922889.2
length 2702
RNA type mRNA
GC content 0.45
exon number 13
gene id pyroxd1
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15101356 ~ 15111265 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCAGACTTCAGCTCTCGCCGTGGTAACATTATAACGCATGCGCATTACGGTACTAAATAACTGCTTAATTCATAGTACAGCTGAGTTGACAGCGAAAAgtGGAGTTGAGTGGTATGGCAGGAAGCTCCCTGGCAGAGAAACACTTCAGATTTGTGGTGGTAGGTGGAGGAATTTCAGGGGTCACCTGTGCAGAACAGCTGGCCTTCCAGTTTCCTAAGGAGGAGGTTGCTCTTCTGACTGCTGCTCCACTGGTGAAGACTGTGACTAATTTAAGACAGGTGTCCAAGACTTTGGAGGATTTTGATGTGGAAGAACAGCCATCCAGCATCTTAGAGGAGAAGTATCCTAACCTGAAGGTTATTCACTCAGCAGTCAGAGTTCTCCATGCAAAACAGCATGTGCTGCAGACTGAGGACGGACATAACGTCCATTAcgagaagctgtgtgtgtgcaccggGGCCAGACCTAAACTCGTCATCGAGGAGAACCCTCATGTGCTGGGTATACGGGACACTGACAGTGCCCAGgattttcagaAGAAGCTTTCCAAAGCCAGGCGCATGATAGTCATTGGGAATGGGGGAATTGCCTTGGAATTGGTcTATGAAGTGGAGGGCTGTGAGGTGATCTGGGTGATAAAGGACAAGGCCATCGGGAATACGTTCTTTGATGCTGGAGCTGCTCAATTCCTTATCCCCTCACTGGAGGTGGAGAAGCCTGAGAAATTGCTGCCCTGCAAGAGAACACACTACACCACTGACAGAGCCGCAAAACCTAAAGCAGGTTCAGCAGATCTTGGTAGCGCCTTAGGTCCAGACTGGCACCAAGACATCAGTCTCAGAGGAGCAGAGGAGGTGTCGCACAATGTGCACGTAGAGTATGAGTGTGAGATGGAAGCAATCCATTCCCAGCAGGACTTCATGCAATCACCACTCTATACACAGAAGACTGATTTAGGGGTGTGGCCAGTTTACGCACAGTTAACCAATGGGAAGGTGTATGGATGTGACTTTATAGTCAGTGCTACAGGTGTGGTCCCAAATAGTGAACCTTTTCTTCAGGGTAACAGCTTTGAGCTGGCAGAGGATCGTGGCCTGAGGGTTGATGAGCACATGCGGACATCTGAGCCAGATGTATATGCAGCTGGAGATGTGTGCAGTGCAGGCTGGGAGCCTAGTCCACTTTGGCAGCAGATGCGCTTGTGGACTCAGGCACGTCAAATGGGCTTTTACGCCGCACGCTGCATAGCAGCCCATGTGCTGGAGGAGGCCATCGAGCTGGACTTCTGCTTTGAGCTCTTTtcacacatcaccaagttcttcaaCTACAAGgtgGTGCTGCTGGGCAAGTTTAATGCTCAGGGCCTGGGGTCGGATCATGAACTGCTGGTGCGCTGCACCAAGGGCCTGGAGTACGTGAAGGTGGTGTTGAGCCGAGGACGCATGGTGGGGGCCGTCCTTATTGGAGACACTGATCTGGAAGAGACCTTTGAGAACCTCATCCTCAACCAGATGGATCTGTCCTCATATGGGGAGGAGTTGCTTAACCCTGACATTGACATTGAGGACTACTTTGACTAAAATAATACGTTGAGGATCCTGATTAGGAATTGTGCAGGTGATAGTAGTTAGTTTACTTCATTGACCTGCAGCTCGTTTGGATCCCACCCTGCTATAACTTTGCACTGGAGCAGGGGTCCTCAGCTGGCAGACCGTGGTCCGGATGTGGACACAATAAAGTATTTCACCTGACCAAATAAAGCAAGCGAAAATACAGTCACAGAGCCTATCAGTGTaaccaatgaaaaaaaaatggccatagTTCAGCAATTCGGCTGGCTATAGTTAAGGTTTATAATCATCAACCAGcttggcttctgtagcagatcctctgttgtggccATAGGGAGCTAGAGTGGTCAGAAAGGGaagttttaattaaagtgtttaaagatgaatggGCAGAGATATgtgcaatattttcccactacTTCAAGTTAAAACATCTGTGACTCAGAGCAGAGGTGTGCACCAGGACaaaaaaatgtcttatttactaatcattaatatttaagcattaaaaagtaattGTTGTTGCCATTCAATCATGTTAGCTGCTTATGGTTCTGCTTAGCTGCTTGGATCTTTGGAAAAAAGATTTATATAACTAgaccttcacaaattttagttgatAACCCCTGCACTACACTGTGCAATTATCTAGACTATTAAACTTACTTCTTTATGAAATCACTAGATAAAGCTAAATGACCAAAATTTGTTCCTACCTTCTATATCCCAAAATCAGCAGATCAATAATGTTTCTCTGTCTTCCACAATCATTTTATCACCCTATTACCCACCATACTCCAGCACGTACGCAGGATATATCTGGTTAGaattaaagacaacaaaaatcCTAGGATATAAAGTATTGTCAACACAGCTATCATGTATATTTTCAGTTTGGTCACCATCAGGTTTGCAGAGATTTTGTTGTCCAGTTGTGTACTTCCCAACAATCACACGTGCAAGGAATATTATTCGTGTGTTGTTTACTTCCTGGCTTTGAGCCTTGCTGTACTTGTCTGCATGCGCTGCATGTAAGGCAAAGTATGTACCTAGAAGAGAATGTGTAACTTTTGTAATCATAACTGAATGTAGTATGAGgacaacaaaatattaaacccAACTAACCTTT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334999 lncRNA downstream 361919 14739216 ~ 14739437 (-) True G282673
TU334974 lncRNA downstream 370352 14715045 ~ 14731004 (-) False G282649
TU334971 lncRNA downstream 370352 14721809 ~ 14731004 (-) True G282649
TU334700 lncRNA downstream 710799 14389823 ~ 14390557 (-) True G282410
TU334699 lncRNA downstream 727843 14372731 ~ 14373513 (-) True G282409
XR_003403333.2 lncRNA upstream 98266 15209348 ~ 15213255 (-) False LOC113532334
XR_003403332.2 lncRNA upstream 98266 15209348 ~ 15213255 (-) True LOC113532334
TU335298 lncRNA upstream 159912 15270994 ~ 15271200 (-) True G282950
TU335356 lncRNA upstream 239624 15350706 ~ 15353441 (-) True G282999
TU335389 lncRNA upstream 276866 15387948 ~ 15390101 (-) True G283022
XM_034313261.1 mRNA downstream 22569 15059512 ~ 15078787 (-) False LOC113531968
XM_034313260.1 mRNA downstream 22571 15059512 ~ 15078785 (-) True LOC113531968
XM_026922971.2 mRNA downstream 22605 15059512 ~ 15078751 (-) False LOC113531968
XM_026922970.2 mRNA downstream 22614 15059512 ~ 15078742 (-) False LOC113531968
XM_026922972.2 mRNA downstream 23160 15059512 ~ 15078196 (-) False LOC113531968
XM_026922587.2 mRNA upstream 5145 15116227 ~ 15118561 (-) True LOC113531721
XM_026923156.2 mRNA upstream 11652 15122734 ~ 15138477 (-) False LOC113532053
XM_026923158.2 mRNA upstream 11652 15122734 ~ 15135324 (-) True LOC113532053
XM_026923159.2 mRNA upstream 11652 15122734 ~ 15132995 (-) False LOC113532053
XM_026923155.2 mRNA upstream 11652 15122734 ~ 15132995 (-) False LOC113532053
XR_003403346.2 other downstream 2520293 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 3441029 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 3513332 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 3841964 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 4094213 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 63266 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 1847442 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 1992483 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 2867703 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 2867703 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile